Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu3g3263 | ATGGCATTTCACGTAGCTTGTCCAATTACATGTCGCCGAATCTGTTTCTGCGCGCTAGGGTTTCCGCGGGGGCTCCATGCTCCCGACCCTGCCAATGGCTTCGCTCACGAAGTTGCCGCTCTCCGCGACTTCCTCGCCGACACTCACAGGGACGACGCCACCGTGCAGGTTCCCGTTCCCAAGGTTGTGCCGCCACCTCCGCCGCCGCTGGATGGTGTTCCTCTTGGCGCTGACGCGATTGATGAGTCCGCCTCCATGAAGGCCAAGCGAATCGCGCTCCAGCGCAAGGGCGCCGCCGCCATGATCGCCGCCGAGGAGTACGCTCGCCGGTTTGAGTCCGGCGATGTGGTGAATATTCCGGGGAATCTTACTGGAGAGGAGCAGGGTCAAGCCAATAGGAGCTATTGTCGACTTTGCAAGTGTGGAGAAAATGAAGGAAGTGAGAAAGCTCAAAAGATGCTATCGTGCAAAAGTTGTGGTAAGAAATACCATAGGAACTGCTTGAGAAGTTGGGGTCGACATAGAGATTTATTTCATTGGAGTTCATGGACCTGTCCTCTTTGCCGAATTTGTGAGGCTTGCAGAAGGACTGGTGATCCATTCAAGTTCATGTTTTGCAAAAGGTGCGATGGTGCTTACCACTGTTATTGTCTGCAACCTCCTCACAAGGGTGTTTGTAATGGGCCCTATTTGTGCCCAAAACACTCTAGGTGTCACAGTTGTGGATCCAATGTCCCTGGAAATGGACTAAGTGTGAGgtgGTTTATGGCATACACCTGCTGTGATGCATGTGGAAGATTGTTTACGAAAGGGAACTACTGTCCTGTTTGTTTGAAGGTTTACAGAGATTCAGAATCAACACCTATGGTTTGTTGTGATACTTGCCAGCTCTGGGTACATTGCCAGTGTGATAATATCAGTGATGAAAAATATCACCATTTTCAAATGGATGGAAATTTGCAGTATAAATGTCCCACATGTCGAGGGGAATGTTATCAGGTCAAGAATCCTGAAGATGCTGCACAAGAGATTTGGAGGAGAAGGAATATTGCTGAGAGAGATTTGATTGCTAGCTTGAGGGCTGCAGCTGGTTTGCCAACTCAAGAAGAGATATTTTCTATTTCACCATTTTCAGATGATGAGGATAGTGGgcctttaaaattaaagagtgAATCTGCTCGTTCCTTTAAGTTCTCTCTAAAGAATTTGGCCAATGACTCACCAAAGAAGAAATTTTCAAGCAAAAAGACTGCTAAGAAAAAAGACTCTCAGTCATTTATGACTAGTAAAATCGACACACACAATAGTTTTGAAGGACATAGTGATGTTAAATCTTTGCATAGCTTAGATGATGATAAGAATGATGATATACAATCCCAGAGAAATGAAGGTCCAGATGTTTACTCATCACCTGCTACTGGAAGCATGAGTCAAACCGAAGCATCTTGCCCTATGAATCAGCCAGGGGTTTTGAAACATAAGTTTGTTGATGAGGTGATGGTCAGTGATGAAGAGAGGAAACCTAGAGTTGTTCGAATTAAAAGCAACAAGGCACATATTCTGGATAGTGAAGAAGAAAGTGGAAAACAGAGTGTTAAGACTCAGAATGTGAAAGGGAAGAAGTTGGTTATAAATTTGGGAGCGCGGAAAATTAATGTGGCTAGTTCCCCGCGGTCTGATACTTCAAGCTGCCAAAAAGATCAAGATCTGATGACTGTTAATGGAAATGAAGATATAAGCCAATGGAGGAAGGGGAACAAGTTTGCATTAGACAGACAAGATGGCACAGCTAGGCATATTGATGGTAAAGGAAACAGAGTTGATTCTGGGCAATCAAAATTTTTCAAGGTTTCAGGTAGAGAAGGAAATTTGATTAAGCTGGGGAAAGTTAAGCCAGATGTTTCTGAATTCAACCTGACCTCTGGTAGAGGCAATATGTCTGATGGGCGGGTAAAACATAGTAGTGGTGGAATGATTGATCAGGTTGGAATAAAAGTCACATCAAGAGGTGAAAGGACGTATTTGGGGAAGCAATCAGAAGGCAGCTCTGATGCATATGATGAGACAGATGACAATAATAATCGCACACCTTCACATTCTTTGCCAAAAGATTCTAAACCTTTACTAAGATTTAAATTCAAGAAACCCAGCATTGAGAGTCAAAATTCTCCTCATCAGGAGGAGGAGAAGATGACAATCAAGGGCCAGAGGTCAAAAAGGAAGAGACCTTCACCTTTTAAGGAGAAAACATCGTTTAATGAGTCTGAAAATGTAAGTCAATCACATCAAGACAGTGTAATGGATGAGATCATGGATGCAAACTGGATATTGATGAAATTGGGCAATGATGCAATTGGAAAGAGAGTTGAAGTTCATCAGACATCTGACAATTCTTGGCACAAGGGAGTGGTTACTGACGTAGTTGAAGGCACTTCAAAGTTATATGTTGCCTTAGACGATGGGAAAGTGAAGACCTTGGAACTCAGGAAACAGGGGGTCCGTTTTGTTCCTCAAAAGCAGAAGAGATCAAAGACATGA | 2538 | 0.4354 | MAFHVACPITCRRICFCALGFPRGLHAPDPANGFAHEVAALRDFLADTHRDDATVQVPVPKVVPPPPPPLDGVPLGADAIDESASMKAKRIALQRKGAAAMIAAEEYARRFESGDVVNIPGNLTGEEQGQANRSYCRLCKCGENEGSEKAQKMLSCKSCGKKYHRNCLRSWGRHRDLFHWSSWTCPLCRICEACRRTGDPFKFMFCKRCDGAYHCYCLQPPHKGVCNGPYLCPKHSRCHSCGSNVPGNGLSVRWFMAYTCCDACGRLFTKGNYCPVCLKVYRDSESTPMVCCDTCQLWVHCQCDNISDEKYHHFQMDGNLQYKCPTCRGECYQVKNPEDAAQEIWRRRNIAERDLIASLRAAAGLPTQEEIFSISPFSDDEDSGPLKLKSESARSFKFSLKNLANDSPKKKFSSKKTAKKKDSQSFMTSKIDTHNSFEGHSDVKSLHSLDDDKNDDIQSQRNEGPDVYSSPATGSMSQTEASCPMNQPGVLKHKFVDEVMVSDEERKPRVVRIKSNKAHILDSEEESGKQSVKTQNVKGKKLVINLGARKINVASSPRSDTSSCQKDQDLMTVNGNEDISQWRKGNKFALDRQDGTARHIDGKGNRVDSGQSKFFKVSGREGNLIKLGKVKPDVSEFNLTSGRGNMSDGRVKHSSGGMIDQVGIKVTSRGERTYLGKQSEGSSDAYDETDDNNNRTPSHSLPKDSKPLLRFKFKKPSIESQNSPHQEEEKMTIKGQRSKRKRPSPFKEKTSFNESENVSQSHQDSVMDEIMDANWILMKLGNDAIGKRVEVHQTSDNSWHKGVVTDVVEGTSKLYVALDDGKVKTLELRKQGVRFVPQKQKRSKT | 845 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu3g3263 | 845 | SMART | PHD_3 | 138 | 189 | IPR001965 | - | |
| Ssu3g3263 | 845 | SMART | PHD_3 | 190 | 236 | IPR001965 | - | |
| Ssu3g3263 | 845 | SMART | PHD_3 | 273 | 328 | IPR001965 | - | |
| Ssu3g3263 | 845 | SUPERFAMILY | FYVE/PHD zinc finger | 271 | 329 | IPR011011 | - | |
| Ssu3g3263 | 845 | SUPERFAMILY | FYVE/PHD zinc finger | 126 | 189 | IPR011011 | - | |
| Ssu3g3263 | 845 | MobiDBLite | consensus disorder prediction | 721 | 735 | - | - | |
| Ssu3g3263 | 845 | MobiDBLite | consensus disorder prediction | 636 | 763 | - | - | |
| Ssu3g3263 | 845 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 127 | 245 | IPR013083 | - | |
| Ssu3g3263 | 845 | SUPERFAMILY | FYVE/PHD zinc finger | 180 | 241 | IPR011011 | - | |
| Ssu3g3263 | 845 | ProSiteProfiles | Zinc finger PHD-type profile. | 133 | 191 | IPR019787 | - | |
| Ssu3g3263 | 845 | PANTHER | PHD FINGER FAMILY PROTEIN | 2 | 839 | - | - | |
| Ssu3g3263 | 845 | PANTHER | HISTONE ACETYLTRANSFERASE | 2 | 839 | - | - | |
| Ssu3g3263 | 845 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 268 | 330 | IPR013083 | - | |
| Ssu3g3263 | 845 | ProSitePatterns | RecR protein signature. | 261 | 283 | IPR015967 | GO:0006281|GO:0006310|GO:0046872 | |
| Ssu3g3263 | 845 | MobiDBLite | consensus disorder prediction | 435 | 460 | - | - | |
| Ssu3g3263 | 845 | MobiDBLite | consensus disorder prediction | 461 | 485 | - | - | |
| Ssu3g3263 | 845 | ProSiteProfiles | Zinc finger RING-type profile. | 136 | 189 | IPR001841 | - | |
| Ssu3g3263 | 845 | MobiDBLite | consensus disorder prediction | 406 | 488 | - | - | |
| Ssu3g3263 | 845 | CDD | RING-H2 | 136 | 189 | - | - | |
| Ssu3g3263 | 845 | ProSiteProfiles | Zinc finger PHD-type profile. | 271 | 330 | IPR019787 | - | |
| Ssu3g3263 | 845 | MobiDBLite | consensus disorder prediction | 408 | 427 | - | - | |
| Ssu3g3263 | 845 | ProSitePatterns | Zinc finger PHD-type signature. | 136 | 188 | IPR019786 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu3g3263 | - | - | gmx:100815407 | 1577.38 |