Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3230 ATGGTTTCGACGGAATCGTCTCTCCTCCTTCCTTCGGGTTCGGGGACGAACAACAATGTTCCAGAAGACAAATGGGAGTTAGCGTACATTGTGTATTTTACCCTCGGCCTCGGTTACCTTCTCCCGTGGAACGTCTTCATCACCGCCGTTGACTACTTCTCCTATCTCTACCCGGACGCCAGCGTTGACCGTATCTTCGCCGTCGTTTACATGCTCATCGGCCTCGTCGGCATCTTCCTCATCATCCTCTACAGCCACAAATCCGACGCCTATGTCAGGATCAACGTTGGCTTGGCCCTCTTCGTCGTTTCCCTCCTCGTCGTTCCCCTCCTCGACGCCTTTTACATCAAGGGTCGGGTCGGCCTCTACGACGGCTTCTACGTCACCGCCGGCGCAGTCGGCCTTGCCGGCGTCGCCGATGCCTTGGTGCAGGGCTCCATTGTTGGCTCCGCCGGCCAGTTGCCGGAGAGGTACATGCAAGCTGTCGTCGCCGGCACCGCTGCTTCTGGGGTGCTTGTTTCTGTCCTGAGGATATTTACAAAAGCTGTTTACACACAAGATGCCTCTGGCCTGCAAAAGAGTGCAAATCTCTACTTTGCTGTGTCAATTGTGATTGTGTTCATATGCATGGTTTTCTACAACATGGTGCACAAACTTCCTGTTATGAAGTACTATAATGAACGTAAGGTTGAGGCAGTCACTGCAAATGAAGACAATGGTCCCCTGACTGGAGCTGCCTGGAGGTCAACTGTATGGAATATTGTGGGAAGAATCAAGTGGTATGGGTTTGGCATTGTGCTCATTTATGTTGTGACTCTTGCAATATTTCCTGGTTACATCACAGAGGATGTACACTCTCAAATTCTTAAGGATTGGTATCCAATTCTCCTAATTACTGGCTATAATGTGTTTGATCTTGTTGGCAAGTGTCTGACTGCGGTTTACCTCCTACAGAATGCAAAAATTGCAGTAGGTGGTTGCATAGCAAGAGTGCTGTTTTTCCCTCTCTTCTTAGGGTGCTTGCATGGTCCCAAATTCTTCCGCACTGAGATTCCTGTGACGATACTGACTTGCCTGTTAGGGCTTACTAATGGATACCTAACCAGTGTATTAATGATTCTGATTCCTAAAACTGTAAAGTTGCAGCATGCAGAGACTGCAGGGATTGTGAgtgtattatttttagtttttggtctGGCTGTTGGGTCTGTTATAGCTTGGTTTTGGGTCATCTGA 1236 0.4814 MVSTESSLLLPSGSGTNNNVPEDKWELAYIVYFTLGLGYLLPWNVFITAVDYFSYLYPDASVDRIFAVVYMLIGLVGIFLIILYSHKSDAYVRINVGLALFVVSLLVVPLLDAFYIKGRVGLYDGFYVTAGAVGLAGVADALVQGSIVGSAGQLPERYMQAVVAGTAASGVLVSVLRIFTKAVYTQDASGLQKSANLYFAVSIVIVFICMVFYNMVHKLPVMKYYNERKVEAVTANEDNGPLTGAAWRSTVWNIVGRIKWYGFGIVLIYVVTLAIFPGYITEDVHSQILKDWYPILLITGYNVFDLVGKCLTAVYLLQNAKIAVGGCIARVLFFPLFLGCLHGPKFFRTEIPVTILTCLLGLTNGYLTSVLMILIPKTVKLQHAETAGIVSVLFLVFGLAVGSVIAWFWVI 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3230 411 PIRSF ENT 4 411 IPR002259 GO:0005337|GO:0016021|GO:1901642
Ssu3g3230 411 PRINTS Delayed-early response protein/equilibrative nucleoside transporter signature 131 151 IPR002259 GO:0005337|GO:0016021|GO:1901642
Ssu3g3230 411 PRINTS Delayed-early response protein/equilibrative nucleoside transporter signature 369 385 IPR002259 GO:0005337|GO:0016021|GO:1901642
Ssu3g3230 411 PRINTS Delayed-early response protein/equilibrative nucleoside transporter signature 387 411 IPR002259 GO:0005337|GO:0016021|GO:1901642
Ssu3g3230 411 PRINTS Delayed-early response protein/equilibrative nucleoside transporter signature 350 366 IPR002259 GO:0005337|GO:0016021|GO:1901642
Ssu3g3230 411 PANTHER EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 17 411 IPR002259 GO:0005337|GO:0016021|GO:1901642
Ssu3g3230 411 PANTHER EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 8 17 411 - -
Ssu3g3230 411 Pfam Nucleoside transporter 133 410 IPR002259 GO:0005337|GO:0016021|GO:1901642
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3230 Ssu-Chr3 88644686 88647001 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3230 5 411 Organic Solute Cotransporters AT1G70330 69.512 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3230 K15014 - gmx:100793043 731.095