Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3228 ATGGGTCCATCTCCAACACTCGTGACTCAAGTGCATATCCTTTCTGCGTCACGTTGTGGCCTATATAAAGGGTGTGAGTTTGGGCAACAAGAGTATCAAGAGCCGAGCCCCTCGCAGCAGAGAGAAACAATGAGTCAATCAGACGTGAATCTATCGTCTCAAAGTGTGATTATAGTTACAGAGAACATACGAAGATCCGCAAACTACAAACCCAACATCTGGAAATACGACTTTCTGCAGTCACTCGTCAGTAAATATGATAAGGAAGAATTTGTTATGCAGTTAAACAAGCGGGTGATGGAAGTAAAGGGTCTTTTTGTTGAAGAGGCGGGAGTTTTGAAGAAATTAGAGTTGGTTGATTGGATCCAAAAGCTCGGCCTTGCCAACTACTTTCAAAAGGAAATCAATGACTTTCTCGAATCTATACTTGCCTATGTCAAAAACAGTCACATTAATCCTAGTGTAGAACAAAATTTGCATGTATCTGCACTATGCTTCAGGCTTTTAAGACAGCATGGATATCCAGTTTTGCCCGATATACTAAGCAGCTTTTTAGATGAAAAGGGTAAAGTAATGAGGAAAAGCTCATATGTTGGCTATGCTAAAGATGTTGTGGAGCTTCTTGAGGCGTCACATTTGGGCTTAGAAGGTGAGAAGATCTTGGATGAGGCCAAAACTTGTGCCATAAAATCTCTCAAGGATGCTTTCTCTCTCACTTCCATCAACGTCAACCAAGTCTCCACTCTGGTGGTTGAAAAAATGGTCCATGCCTTGGAGCTTCCGTCCCATTGGAGAGTACCGTGGTTTGACGTCAAATGGCACGTGGAGCAGTACAAAAAGGACGAACGTATGGAGCCAATTTTACTTGAATTGgcgaaattaaatttcaacacgATTCAGGCCACACTTCAATTGGAGGTCAAGGAATTATCCAGGTGGTGGGAGAATCTtggcataaaaaaagaattgagcTTTGCAAGGAATAGGTTGGTTGAAAGCTTCATGTGTGCAGCAGGAGTTGCTTTTGAACCCAAGTATAAATCCGTCAGAAAATGGCTCACTAAAGTTATTATTTTCGTACTAGTCATTGATGATGTTTATGATATACACGCCTCATTTGAAGAGTTGAAGCCTTTCACAATGGCGTTTGAGAGATGGGACGACAAAGAACTTGAAGAACTTCCAGAGTACATGAGAATTTGCTTCCATGCACTTAAAGATGCCACAAATGAAATTGCTTATGAAATTGGCGGAGAAAATAACTTTCACTTGGTGTTTCCTTACCTAAAGAAAGCGTGGATAGACTTTTGCGAAGCATTATACGTGGAAGCAAAGTGGTACAACAAGGGATACATTCCGTCGTTGCAAGAATATTTAAGCAATGCTTGGATTTCATCTTCGGGGCCAGTAATTTTACTCCATTCATATTTTGCTACAATGCATCAAGTAACAGATGCGATAGACGATTTTCTACACACATACGAAGATTTGATCTACAATGTATCTCTTGTTATTAGACTGTGCAATGATTTAGGGACCACGGTGGCTGAAAGAGAAAGAGGTGATGCTGCTTCGTCAGTCCTATGCTATATGAATCAAATGAATACTTCAGAGGAAAAAGCAAGAAAGCATATCCAATATATCATACATGAAGcatggaaaaagataaatggacATTGCTCCAGTCAAGTTGCTTCGGTGGAGCCATTTCTTACTCAAGTCATGAATGCGGCTCGTGTGGCCCATACCCTTTATCAAAATGGCGATGGGTTTGGCATCCAGGACCGAGAcatcaaaaaacatattttatcactAGTTGTTGAACCTCTTTAA 1833 0.3928 MGPSPTLVTQVHILSASRCGLYKGCEFGQQEYQEPSPSQQRETMSQSDVNLSSQSVIIVTENIRRSANYKPNIWKYDFLQSLVSKYDKEEFVMQLNKRVMEVKGLFVEEAGVLKKLELVDWIQKLGLANYFQKEINDFLESILAYVKNSHINPSVEQNLHVSALCFRLLRQHGYPVLPDILSSFLDEKGKVMRKSSYVGYAKDVVELLEASHLGLEGEKILDEAKTCAIKSLKDAFSLTSINVNQVSTLVVEKMVHALELPSHWRVPWFDVKWHVEQYKKDERMEPILLELAKLNFNTIQATLQLEVKELSRWWENLGIKKELSFARNRLVESFMCAAGVAFEPKYKSVRKWLTKVIIFVLVIDDVYDIHASFEELKPFTMAFERWDDKELEELPEYMRICFHALKDATNEIAYEIGGENNFHLVFPYLKKAWIDFCEALYVEAKWYNKGYIPSLQEYLSNAWISSSGPVILLHSYFATMHQVTDAIDDFLHTYEDLIYNVSLVIRLCNDLGTTVAERERGDAASSVLCYMNQMNTSEEKARKHIQYIIHEAWKKINGHCSSQVASVEPFLTQVMNAARVAHTLYQNGDGFGIQDRDIKKHILSLVVEPL 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3228 610 SFLD Isoprenoid Synthase Type I 286 609 - -
Ssu3g3228 610 PANTHER OS04G0344100 PROTEIN-RELATED 63 610 - -
Ssu3g3228 610 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 73 282 IPR008930 -
Ssu3g3228 610 SUPERFAMILY Terpenoid synthases 284 610 IPR008949 -
Ssu3g3228 610 Pfam Terpene synthase, N-terminal domain 73 240 IPR001906 GO:0010333|GO:0016829
Ssu3g3228 610 PANTHER ALPHA-FARNESENE SYNTHASE 63 610 - -
Ssu3g3228 610 Gene3D Farnesyl Diphosphate Synthase 71 600 IPR008949 -
Ssu3g3228 610 Gene3D - 110 284 IPR036965 GO:0010333|GO:0016829
Ssu3g3228 610 SFLD Terpene Cyclase Like 1 C Terminal Domain 286 609 IPR034741 -
Ssu3g3228 610 Pfam Terpene synthase family, metal binding domain 289 555 IPR005630 GO:0000287|GO:0010333|GO:0016829
Ssu3g3228 610 CDD Terpene_cyclase_plant_C1 64 609 IPR044814 GO:0010333|GO:0016102
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3228 Ssu-Chr3 88620822 88624851 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3228 K14173 - gmx:100812119 981.859