Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3225 ATGGATAGTTACGAAGCTACAAGAATTGTGTTTTTAAGGATCCAAAACTTGGACCCTGAAAATGCTTCCAAAATCATGGGTGTACTTCTGCTTCAAGACCATGGTGAGAAGGAAATGATTAGATTAGCATTTGGTCCAGAAGCACTTGTTCACTCTGTGATTGTCAAAGCCCGCAAGGAGTTGGGTTTACCTTCGAACTCTCCGCCCACACCATCCACTCCTCCTTCTCCTTCACCCTTCGTTTCTAGGCAAAACTCTACTTCTTCAAGGCTCAGTGGTATAAGCCTTCCTCCTGCTCTCACTATCCCAAACCCTTCTTCTACTTCTGCTTCATGGCCTACTATGTCTGAGCTTCAAACCCCAGATGATTTGATGAGTCCCAACCATTTGGTTGTTGGCTCTTCCACTTCTTCATCTTCCTTACCCTTCTATGCAAACGGAGGCTCAGATCCAATTGATGACTTCCGACTTCAAGACCAGCTTTCTTTCCTGAATGATGGCTCTCCTACTAGTGCTGCTCTTGGCCACAAGAACAACTCAGATTTGTTTTATCCTCCTCACTCAGACTTGTCTTCAAGTCCTACTGGTACTGCTGACCCTACTCTCTTTCCTTCATATGGTTGGGGAGGGTCTCTCCACCGCAGGAGCTGCTCAGTCAACGATGCTTGTCTGGGCTCTGAGGACCCTAATTCCGGGTTGGGTTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTACTGTAAAAATGGGACTAGTTGCAGGTTCCTTCATGGTGGACTTGGAGATGCTGATGGTGCTGCAATGGTTGGGTCTCCTAGCAAGATTGAGATGATGGAGCAGTGCCACGAGATCTTCAGATCCAAATCTGCTCAGCAGCAAAGATTGGCTGCTGCTTCTCAGCTCATGGCCTCTTCCTCTTTTCCCTACTCCCCAAAGTGCATGAATTTCCTGTTGCAGCAGCAACAGAATGATCCTCAAAGAGCGGCAGCTGCAGCTCTGATGATGAGTGAGGATTTACATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCTTTGAACAGTCCTGGAATGGTAAACCCTGCTTCCAGGCAGATCTACTTGACTTTCCCAGCAGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGCCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAGCGGATGTTTGGCTTTGTTACCTTTGTTTATCCAGAGACTGTGAAGCTCATTCTATCTAAAGGAAACCCTCATTTTGTTTGTGATGCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCGGACAAGAAGCAGCAGCAGCAGGTAGATAGAGGAGACTTTTCACCTTGTGGTACTCCTACTGGACTGGATGCTAGAGACCAATATGATCTTCAACTTGGAGGCAGAATGTTCTACAGTACTCAAGATATGCTGTGGAGGAGGAAGCTGGAGGAGCAAGCTGATTTGCAGCAAGCTCTTGAGCTCCAAAGTAGGAGGTTAATGGGTCTGCAACTTCTTGACATCAAGAAGCATCACCAGCGTGCACTCTCTACTGGAAGTCCAAATCCTTCTCCCACCCACTCTCCTAACATGTTCAATCAAAATCTTGTTCTTCCTTCCTTTCACATGAGTTTAGAGGCACCAGAGGGTGAGAGTGGTTCAAGTTCTGCTCCAGCTAGTACTTCATCAGTTTCTGCTGGTCAGCAGCCGGTCAATATTTCTGTTGGCAAGGAAGTGGTGGTCAATGGCGAAAATGGATACAATGAAGGCAATGGCAAGCAGAGCTCTGGTCATGAAGATCGTGATTTGCAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGCTGTAGACTACGTGGCTCCCTTCTCCAATGGACCTAATGTGGCCATTGATGCAGATGCCTCAGCTGCATCTGCCAACTCTAAATTTGGTACTAGCACATTACTTCCAGCAGCATCTGCTCTTGACATAGGAACTTTCAAATCCTATAACTGCCAAATACCAAGGTTCTCTTCCGGTCATGGAACTATTGGGATGTTCGCAGGCACTGGTGGACCGATTGGCATTTAG 2124 0.4656 MDSYEATRIVFLRIQNLDPENASKIMGVLLLQDHGEKEMIRLAFGPEALVHSVIVKARKELGLPSNSPPTPSTPPSPSPFVSRQNSTSSRLSGISLPPALTIPNPSSTSASWPTMSELQTPDDLMSPNHLVVGSSTSSSSLPFYANGGSDPIDDFRLQDQLSFLNDGSPTSAALGHKNNSDLFYPPHSDLSSSPTGTADPTLFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADGAAMVGSPSKIEMMEQCHEIFRSKSAQQQRLAAASQLMASSSFPYSPKCMNFLLQQQQNDPQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQQVDRGDFSPCGTPTGLDARDQYDLQLGGRMFYSTQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRALSTGSPNPSPTHSPNMFNQNLVLPSFHMSLEAPEGESGSSSAPASTSSVSAGQQPVNISVGKEVVVNGENGYNEGNGKQSSGHEDRDLQECLEHNLPDSPFASPTKAAVDYVAPFSNGPNVAIDADASAASANSKFGTSTLLPAASALDIGTFKSYNCQIPRFSSGHGTIGMFAGTGGPIGI 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3225 707 MobiDBLite consensus disorder prediction 61 122 - -
Ssu3g3225 707 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 695 - -
Ssu3g3225 707 SMART rrm1_1 365 435 IPR000504 GO:0003723
Ssu3g3225 707 MobiDBLite consensus disorder prediction 592 611 - -
Ssu3g3225 707 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 376 421 IPR000504 GO:0003723
Ssu3g3225 707 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 257 IPR000571 GO:0046872
Ssu3g3225 707 MobiDBLite consensus disorder prediction 559 582 - -
Ssu3g3225 707 Gene3D - 227 321 - -
Ssu3g3225 707 MobiDBLite consensus disorder prediction 556 582 - -
Ssu3g3225 707 Gene3D - 362 460 IPR012677 -
Ssu3g3225 707 SUPERFAMILY RNA-binding domain, RBD 376 454 IPR035979 GO:0003676
Ssu3g3225 707 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 364 440 IPR000504 GO:0003723
Ssu3g3225 707 MobiDBLite consensus disorder prediction 79 122 - -
Ssu3g3225 707 MobiDBLite consensus disorder prediction 525 544 - -
Ssu3g3225 707 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 695 - -
Ssu3g3225 707 SUPERFAMILY CCCH zinc finger 235 257 IPR036855 GO:0046872
Ssu3g3225 707 ProSiteProfiles Zinc finger C3H1-type profile. 232 259 IPR000571 GO:0046872
Ssu3g3225 707 MobiDBLite consensus disorder prediction 523 544 - -
Ssu3g3225 707 CDD RRM_AtC3H46_like 366 435 IPR034365 -
Ssu3g3225 707 SMART c3hfinal6 234 258 IPR000571 GO:0046872
Ssu3g3225 707 MobiDBLite consensus disorder prediction 441 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3225 Ssu-Chr3 88443013 88445916 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3225 - - gmx:100801341 1204.89