Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3221 ATGAGATACCCACCTGGTAGCCTCGTTGGAGAACACAGCATTCTGTTCCTCAGAGGCTTCACGATATTGTTCCTTAGTTGTATAGCCATTCGGCTTAACTTGTGTCTTTCTAGTATCCCTTCTTCACTAAAATCACTTCCCCTAGGAGGACATTTCAATTTTGATGAAGTTAGCCTTAGCCATGCAGCCAGGGACTTTGGCAACAGGCACCAGTATCATCCAATGGCAGTACTGCATCCAGAATCAGTTTCTGATATAGCGGCCACCATAGAACATATCTGGCTCATGGGCCCTAGCTCACACCTTACAGTTGCAGCCAGGGGCCACGGTCACTCACTCCAGGGCCAGGCTCAAGCTCATGGAGGAGTTGTGATCAACATGGAATCACTCAAGATCCCAGAAATGCAGGTAAAATGGATTAGAGTGCTATACTCAGATTTCACAGCATTCACAAGAGACCAAGAGCGGTTAATATCTGCAGAAAACACGTTTGACTACATTGAAGGATTTGTGATAATAAACAGAACTGGTCTGCTAAATAACTGGAGATCATCCTTCAACCCACAAGACCCAGTTCAAGCTAGTCATTTCAAGTCGGATGGAAGAACTCTCTTCTGCCTTGAATTGGCCAAATACTTTAACTTGGAAGAAATTGATGCAGCAAATCAGGAAGTTGAGAAATATTTGTCCCGTTTAAACTACATCCCATCAACCCTTTTTTCAACGGAAGTCACATTCGTAGATTTCTTAGACAGGGTGCACGTATCCGAGGTTTCGGCCCACTTTGACACCTCTAGTGGGAGTGAGGGGACCATCTGCATAAAGCACCTTGTAATCAAGCACCAACTGGTGCCAGATTGCATGAGTGATTTCACTCCACAACCGTGTACCTCAATCCATTTTCTCATTCTCCCCACTTGCATTTCACTCTCGTTGTCCGTGGAATCCCCACCAGCCACCTTGTGGCCACCACACTTCACTGAAGTCCCTACGCTTTGCCACTACAGTCTATGTTATCGTAGttgtaTCTCCAAAACTCAAGTAAACAAGGAAGAATAA 1059 0.4504 MRYPPGSLVGEHSILFLRGFTILFLSCIAIRLNLCLSSIPSSLKSLPLGGHFNFDEVSLSHAARDFGNRHQYHPMAVLHPESVSDIAATIEHIWLMGPSSHLTVAARGHGHSLQGQAQAHGGVVINMESLKIPEMQVKWIRVLYSDFTAFTRDQERLISAENTFDYIEGFVIINRTGLLNNWRSSFNPQDPVQASHFKSDGRTLFCLELAKYFNLEEIDAANQEVEKYLSRLNYIPSTLFSTEVTFVDFLDRVHVSEVSAHFDTSSGSEGTICIKHLVIKHQLVPDCMSDFTPQPCTSIHFLILPTCISLSLSVESPPATLWPPHFTEVPTLCHYSLCYRSCISKTQVNKEE 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3221 352 PANTHER CYTOKININ OXIDASE/DEHYDROGENASE-LIKE PROTEIN 136 259 - -
Ssu3g3221 352 Gene3D - 27 137 IPR016167 -
Ssu3g3221 352 SUPERFAMILY FAD-binding/transporter-associated domain-like 48 131 IPR036318 GO:0050660
Ssu3g3221 352 SUPERFAMILY FAD-linked oxidases, C-terminal domain 137 259 IPR016164 GO:0003824|GO:0050660
Ssu3g3221 352 Gene3D - 138 264 IPR016170 -
Ssu3g3221 352 PANTHER CYTOKININ OXIDASE/DEHYDROGENASE-LIKE PROTEIN 10 135 - -
Ssu3g3221 352 PANTHER GULONOLACTONE OXIDASE 10 135 - -
Ssu3g3221 352 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 74 109 IPR006093 GO:0016491
Ssu3g3221 352 PANTHER GULONOLACTONE OXIDASE 136 259 - -
Ssu3g3221 352 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 136 260 IPR015345 GO:0009690|GO:0019139|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3221 Ssu-Chr3 88357786 88369943 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3221 K00279 - gmx:100808619 239.965