Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3218 ATGGCGGACAGCGCGGTTTCCTTTGTTCTAGATCACTTGTCCCAGCTGGTGGCACGCGAAGCTAAGTTGCTGTGTGGCGTGGAGGACAGGATCCAGTCCCTCCAAAATGAGCTCCAAATGATCAACGACTACGACAACCTGCCAAGGAGATTGAAACCATGCTTTCTGTATCTTGGGATATTCCCTGAAGACTTTGAAATCCCTGTTAGGCCATTACTGCAACGATGGGTTTCCGAAGGATTTATACAGGAAACAGGGAATAGAGACCCAGATGATGTCGCAGAAGACTACTTGTACGAGCTCATTAATCGTAGTTTGGTCCAAGTAGCAACAGTGAAGACTAGAGGAGGTGTGAAAACCTGTCGCATACATGATCTTCTCCGAGATCTTTGCATATCGGAGAGCAAGGAGGACAAAGTTTTTGAAGTTTGCACAGATAATAACATTCTAATCCCGACAAAACCTCGCAGACTGTCCATCCATTGTAACATGGCTCACTACATTTCTTCAAGCAACAACGACCATTCATGTATCCGTTCTTTGTTCATCTTTGACCCACGTTACTATTTAACTCCGAGTGAGTTCAAATTGCTTTTCAAATGCTTCAAATTGGTTCGGGTATTAGAGCTTGGAAGAAACAGCTGCGGAGGAAAGATCCCTTCCAATCTGGGTGACTTTATCCACTTAAGGTATTTGAGAATAGACATGGAGCTTGTTAGAATTATTCCAGCTTCTATACTTACCCTTCAGAATTTACAAACCATAGACCTTGGTAATTGGCTTCTGAGGATCTCAATTTCTTTCCCTGCTCAAATGTGGAAGCTCAAACATTTAAGGCATTTGTATGCTAGTGGGCCTATCATGCTTCGGGGTCACTATTCAGGATCAGATGAGGTTATGTGGAATCTTCAAACCATCAACGCCATTGTATTGGACAAACAAACATCGTCTCTGATAAAGGAAGGAAGCTTCcccaatcttaaaaaattagggTTGCAATTCTCTTCAGGCCGCAAGGGTAAATGGCCAAAGTTGTTGCAGAGCCTACAGCAATTAAGTCATTTGAATAAGTTAAGTATGTTCCTCCCAGTGAAGATTCCTAAAGGTTCAATGCCCCAAACTATAAGGGCATGGAATGGCAGATTGGTTGTAAGCCACAGGAACTATTGCAAAGCCTAG 1179 0.4249 MADSAVSFVLDHLSQLVAREAKLLCGVEDRIQSLQNELQMINDYDNLPRRLKPCFLYLGIFPEDFEIPVRPLLQRWVSEGFIQETGNRDPDDVAEDYLYELINRSLVQVATVKTRGGVKTCRIHDLLRDLCISESKEDKVFEVCTDNNILIPTKPRRLSIHCNMAHYISSSNNDHSCIRSLFIFDPRYYLTPSEFKLLFKCFKLVRVLELGRNSCGGKIPSNLGDFIHLRYLRIDMELVRIIPASILTLQNLQTIDLGNWLLRISISFPAQMWKLKHLRHLYASGPIMLRGHYSGSDEVMWNLQTINAIVLDKQTSSLIKEGSFPNLKKLGLQFSSGRKGKWPKLLQSLQQLSHLNKLSMFLPVKIPKGSMPQTIRAWNGRLVVSHRNYCKA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3218 392 Gene3D - 4 44 - -
Ssu3g3218 392 PANTHER - 43 372 - -
Ssu3g3218 392 Pfam Rx N-terminal domain 5 43 IPR041118 -
Ssu3g3218 392 Gene3D - 45 135 IPR036388 -
Ssu3g3218 392 CDD RX-CC_like 2 42 IPR038005 -
Ssu3g3218 392 SUPERFAMILY L domain-like 122 358 - -
Ssu3g3218 392 Gene3D Ribonuclease Inhibitor 140 373 IPR032675 -
Ssu3g3218 392 PANTHER DISEASE RESISTANCE PROTEIN RP 43 372 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3218 Ssu-Chr3 88326925 88329225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3218 145 382 Receptor kinase-like Gene Family AT2G25790 25.781 1.01e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3218 - - aprc:113866059 491.5