Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3217 ATGAGTGGTTCCAAGATGCTACTATTTGGGTCATTTACTGAAGATGAAACCCGATCATTGCTGTCAAAGCAGTCTTCTGGGAAAAATGAAAAGCCTGTGGAGAAGAATCAGCTGCAATTTGGTTCTCTGAATTCTGTTACTGTTGAGTCAAACAACCTTCTAAATTCATTGAAAGCACCAGATAGTGCTCCACCCTCTGATTCTCAGAAATGCAATGGAGTGAAAAGTGTCAGTGATAATTCACCTGAAGTATCAGCAACAATTAAAGAGAATGGCAGCATTACCAATTTCTCCACCAGCCCCACGAGTACCATTAGTGTAAAtgaagttgaagaaaaaaatgtgaattctTTTACGTTACTTGGTGTAGATGGTCCCTCAAACAAGTTTACAAAATTGAGCCTAGATGCTTCTGAGGCTGAAAGCTTGAAGAATGTACATAAAACTGGCAGCGGGGATGATTCTGCATCAAAGTTATCTGATCAAGTTCCCCAAAAGGCACCAAATGGGCATGCTGTTATGCATGTTAAGGATATACTGCCTCGAGGCCTTATTAACTCTGGGAATCTATGCTTTCTTAATGCAACGATGCAGGCTCTCTTGTCATGTTCACCTTTTGTTCAGCTTTTACGGCAATTAAGAACTCGCAGCCTTCCTAAGGTTGGATATCCCACATTGACGGCATTTGCTGAGTTTATAGCCCAATTTGACATGCCAAgcacaacaaaattaaagaagcaAGATACAGATACATTTGAGTCTGGAAGGCCATTTTGCCCTGTTATGTTTGAAGGTGTTCTAGCAAATTTTACTCCAGATGTGCCAAATAGCTTTTCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATAAAATGCATGATGAATTACTGAAGCTTGAAGGACAGTCTTCAAGTCTTAATGGTAGCAAATCTTCTCTGGTTTCTTCTGTGGAAGATGATGAATGGGAAACAGTGGGGCCAAAGAATAAATCTGCTGTAACAAGGACTCAGAGCTTTGTCCCATCAGAATTAAGTGGTATTTTTGGAGGACAACTTAGAAGTTTGGTGAGAGCTAAAGGAAATAGAGCTTCTGCCACTGTTCAACCATATCTCTTGCTTCATCTTGACATTTGTCCTGATGCTGTTCACACGATTGAGGATGCACTGCACTTGTTTTCTGCACCAGAAACTCTTGAAGGGTACCGAACATCAGTCGCTGCAAAGGTATATAAcccttttatttacttttttggatacattttattatattatctttacaCCATCATACTTTCATATACAATGTTCATAAAgataaatgtctttttataa 1347 0.3742 MSGSKMLLFGSFTEDETRSLLSKQSSGKNEKPVEKNQLQFGSLNSVTVESNNLLNSLKAPDSAPPSDSQKCNGVKSVSDNSPEVSATIKENGSITNFSTSPTSTISVNEVEEKNVNSFTLLGVDGPSNKFTKLSLDASEAESLKNVHKTGSGDDSASKLSDQVPQKAPNGHAVMHVKDILPRGLINSGNLCFLNATMQALLSCSPFVQLLRQLRTRSLPKVGYPTLTAFAEFIAQFDMPSTTKLKKQDTDTFESGRPFCPVMFEGVLANFTPDVPNSFSGRPRQEDAQEFLSFVMDKMHDELLKLEGQSSSLNGSKSSLVSSVEDDEWETVGPKNKSAVTRTQSFVPSELSGIFGGQLRSLVRAKGNRASATVQPYLLLHLDICPDAVHTIEDALHLFSAPETLEGYRTSVAAKVYNPFIYFFGYILLYYLYTIILSYTMFIKINVFL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3217 448 MobiDBLite consensus disorder prediction 16 42 - -
Ssu3g3217 448 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 416 - -
Ssu3g3217 448 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 416 - -
Ssu3g3217 448 Gene3D Cysteine proteinases 170 415 - -
Ssu3g3217 448 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 182 448 IPR028889 -
Ssu3g3217 448 Pfam Ubiquitin carboxyl-terminal hydrolase 183 369 IPR001394 GO:0004843|GO:0016579
Ssu3g3217 448 SUPERFAMILY Cysteine proteinases 181 412 IPR038765 -
Ssu3g3217 448 MobiDBLite consensus disorder prediction 55 83 - -
Ssu3g3217 448 MobiDBLite consensus disorder prediction 144 168 - -
Ssu3g3217 448 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 183 198 IPR018200 GO:0004843|GO:0006511
Ssu3g3217 448 MobiDBLite consensus disorder prediction 149 164 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3217 K11841 - gmx:100799656 711.064