Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3216 ATGGGGTGGGAGGGGAGTGGGGGTTTTGAGAGCTGGAAGCTGGTTTCTGAGACCAAGGCGCACGAGATGGCTGTGTTGTGCATGTGTTTGATGGGGGACTTCTTGTGCAGTGGTTCCGCGGATAAAAGCATAGGGATTTGGAGGAGAGAGGCTTTTGGTAAGCTTTGTAAAGTTGGGGTCATAAGTGGTCATGAAGGGCCTGTCAAGTGTTTGCAGGCCTCGTCTAATAGAATTGGTGGTGGCTTTTTGCTCTATAGTGGGAGTCTTGACAAAAGCGTGAGAGTTTGGTGGGTTCCAAGGTATGATAATGATGCACAACTAGAGGATAACAACTCTACAAGATTTGGCACAGTGAATGAGTCCATCATCCCATGTTAG 378 0.4815 MGWEGSGGFESWKLVSETKAHEMAVLCMCLMGDFLCSGSADKSIGIWRREAFGKLCKVGVISGHEGPVKCLQASSNRIGGGFLLYSGSLDKSVRVWWVPRYDNDAQLEDNNSTRFGTVNESIIPC 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3216 125 SMART WD40_4 11 48 IPR001680 GO:0005515
Ssu3g3216 125 SMART WD40_4 54 97 IPR001680 GO:0005515
Ssu3g3216 125 Pfam WD domain, G-beta repeat 58 96 IPR001680 GO:0005515
Ssu3g3216 125 Pfam WD domain, G-beta repeat 13 47 IPR001680 GO:0005515
Ssu3g3216 125 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 112 IPR045182 -
Ssu3g3216 125 SUPERFAMILY WD40 repeat-like 10 99 IPR036322 GO:0005515
Ssu3g3216 125 Gene3D - 7 122 IPR015943 GO:0005515
Ssu3g3216 125 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 96 - -
Ssu3g3216 125 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 96 IPR001680 GO:0005515
Ssu3g3216 125 PANTHER OS01G0946100 PROTEIN 1 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3216 Ssu-Chr3 88310685 88311062 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3216 - - gmx:100775295 231.491