Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3209 ATGAATGACCTTAAGAAATGTGAACTGATTACGTGTAGAATTAGGATCTTAAACGGCACCGTGGTGAAATCCTTTGCAATTGTTGATATTATTGACTTCAATGGCAGTTTTTTGTCTCGTGTGCGAGATCTTGCTGGTTCTAACCCAATAATACTGGTGGTGACTAAGGTTGATCTCCTTCCAAGAGATACTGATCTTAATTGTGTTGGGGATTGGGTTGTAGAGGCTACTATGAGAAAGAAGCTGAATGTTCTCAGTGTCCATCTGACCAGTTCCAAATCATTGGTTGGAATAATTGGAGTGATATCAGAAATCCAGAAAGAGAAGAAGGGAAGAGATGTTTACATTCTGGGTTCGGCTAATGTTGGGAAATCTGCTTTCATCAATGCTTTACTAAAAACAATGGCTATAAATGATCCAGTGGCTGCATCTGCACAAAGATACAAACCAATACAATCTGCAGTTCCTGGAACTACCTTAGGGCCAATACAAATTAATGCTTTCCGAGGAGGAGGGAAATTGTATGACACTCCTGGAGTTCATCTCTACCATAGGCAAACTGCAGTTGTGCATTCTGAAGATCTACCCTGCCTTGCTCCTCAAAGCCGACTGAGGGGGCAGTCTTTCCCAAGTTCTATAGTATCATCAGACAATGTAGAGGAAGGAGCTTCCATTGTGACTGGCTTGAATGCCTTTTCGATATTTTGGGGAGGTCTTGTTAGAATTGATGTCTTGAAGGTTCTTCCAGAAACTTGTTTGACATTTTATGGGCCCAAGAGACTACTGATTCATATGGTACCCACAGAGCAAGCAGATGAATTTTATCAGAAAGAACTTGGAGTTCTGCTAACCCCACCAAGTAGAGTAGAGAAAACTGGGAACTGGAAAGGGCTTGAATCAGAACGtaaattgcaaataaaattcGAAGATGTGGAAAGACCAGCTTGTGATATAGCTATATCAGGTCTAGGATGGTTTACTGTAGAGCCAGTTAGTAGGTCACTCAAAATCTCACAGCCAAAACCTGTAGAGACTGCTGGGGAATTGATTTTGGTCGTACACGTCCCCAAGCCTGTTGAGATTTTTGTGAGGCCACCAATACCGGTAGGCAAGGCTGGAGCAGAGTGGTACCAGTATGTAGAATTAAcagagaaagaagaggaaatgAGACCAAAATGGTACTTTTGA 1188 0.4091 MNDLKKCELITCRIRILNGTVVKSFAIVDIIDFNGSFLSRVRDLAGSNPIILVVTKVDLLPRDTDLNCVGDWVVEATMRKKLNVLSVHLTSSKSLVGIIGVISEIQKEKKGRDVYILGSANVGKSAFINALLKTMAINDPVAASAQRYKPIQSAVPGTTLGPIQINAFRGGGKLYDTPGVHLYHRQTAVVHSEDLPCLAPQSRLRGQSFPSSIVSSDNVEEGASIVTGLNAFSIFWGGLVRIDVLKVLPETCLTFYGPKRLLIHMVPTEQADEFYQKELGVLLTPPSRVEKTGNWKGLESERKLQIKFEDVERPACDIAISGLGWFTVEPVSRSLKISQPKPVETAGELILVVHVPKPVEIFVRPPIPVGKAGAEWYQYVELTEKEEEMRPKWYF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3209 395 Pfam 50S ribosome-binding GTPase 114 181 IPR006073 GO:0005525
Ssu3g3209 395 Gene3D - 21 184 IPR027417 -
Ssu3g3209 395 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 14 183 IPR030378 GO:0005525
Ssu3g3209 395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 184 IPR027417 -
Ssu3g3209 395 PANTHER NO-ASSOCIATED PROTEIN 1, CHLOROPLASTIC/MITOCHONDRIAL 27 395 IPR044229 GO:0003924
Ssu3g3209 395 CDD YqeH 13 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3209 Ssu-Chr3 88199258 88204112 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3209 K13427 - gmx:100798614 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3209 3 88199258 88204112 Ssu3g3209 3 88199258 88204112 ECH