Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3200 ATGGACGCTCAGAGAGCTCTCCTCGACGAACTCATGGGTGCAGCGCGCAACTTGACGGAGGAAGAGAGGAAGGGGTACAAGGAAGTGACGTGGGACGACAAGGAAGTGTGTGGATTCTACATGGTGCGCTTTTGCCCTCACGATCTCTTCGTCAACACGCGCAGTGATCTGGGACCTTGCCCGAGAATACATGACCCCAAGTTGAAAGAAAGTTTTGAGAAATCTCCAAGACATGATGCATATGTACCCAAATTTGAAGCTGAACTTGCTCAATTTTGTGAGAAATTGGTGATGGACTTGGATAGAAGAGTAAGACGTGGACGAGAACGTCTTGCTCAAGAGGTGGAGccggcaccaccaccaccattgacaACCGAAAAATCTGAGCAGCTATCTGTGCTGGAGGAGAAAATAAAGAACCTTCTGGATCAAGTTGAATCTCTTGGCGAAGCTGGAAAGGTTGATGAAGCTGAAGCTCTTATGAGAAAGGTGGAGACACTTAATACTGAGAAGACGGCCTTAACACAACCTCAAAATGATAAGGTGTTGATGCTTGGTCAGGAGAAGAAGATGGCACTCTGTGAAATATGTGGTTCTTTTCTTGTGGCAAATGATGCTGCGGAAAGGACTCAGTCTCATGTCACAGGAAAGCAGCATGTTGGTTATGGCATGGTTCGTGACTTCATAAATGAGTATAAGGCTGCTAAGGAGAAAGCTAATGAAGAGGAAAGATTAGCTCGGGAAAGAGAGGCAGAAGATCGGAAGAAACAGAGGGAGAAGGAGCAtgagagaaggagaagaagtgATTCAAGTGATAGGGAGAGACATCGTGATAAAGATTACAATAGGGAGCGGGATAGGCATAGAGATAGAGACTTAGATCGTGAAAGGTCTCGGGAGCATGATGTTAGAGGTTATCGAGATGGGGGAAGGGGGATGGATTATAGGGTGAGGAATGGAAGAAACGGAGGTAGAGACAGGTACCGTGATCGGAGCAGGTCACGCTCCCCTGTTAAGCATAGCTACAGAAGGTCTTCTTGA 1041 0.4467 MDAQRALLDELMGAARNLTEEERKGYKEVTWDDKEVCGFYMVRFCPHDLFVNTRSDLGPCPRIHDPKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLAQEVEPAPPPPLTTEKSEQLSVLEEKIKNLLDQVESLGEAGKVDEAEALMRKVETLNTEKTALTQPQNDKVLMLGQEKKMALCEICGSFLVANDAAERTQSHVTGKQHVGYGMVRDFINEYKAAKEKANEEERLAREREAEDRKKQREKEHERRRRSDSSDRERHRDKDYNRERDRHRDRDLDRERSREHDVRGYRDGGRGMDYRVRNGRNGGRDRYRDRSRSRSPVKHSYRRSS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3200 346 Pfam LUC7 N_terminus 2 249 IPR004882 GO:0003729|GO:0005685|GO:0006376
Ssu3g3200 346 Coils Coil 1 21 - -
Ssu3g3200 346 PANTHER RNA-BINDING PROTEIN LUC7-RELATED 1 346 IPR004882 GO:0003729|GO:0005685|GO:0006376
Ssu3g3200 346 MobiDBLite consensus disorder prediction 236 335 - -
Ssu3g3200 346 PANTHER ARGININE-ASPARTATE-RICH RNA BINDING PROTEIN-LIKE 1 346 - -
Ssu3g3200 346 MobiDBLite consensus disorder prediction 236 346 - -
Ssu3g3200 346 Coils Coil 124 151 - -
Ssu3g3200 346 Coils Coil 225 265 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3200 - - gmx:100792348 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3200 3 88147871 88150237 Ssu3g3200 3 88147871 88150237 ECH