Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3197 ATGGCGTCCTCTCCCGCTGTGAAGCGCTTCCTCTCCTCTTCCCTCCTCTCCCGGTCTCTCCTTCGCCCTGCTGCTTTCGCTTCCCACTCTTTCAACACCAACGCCGTGCGCCAGTACGACGACCATGCCGATGACCACAACGTCGACGTCGATCGTCGCTCTGAACGCTCTTTCCCTCGCGTTGCGCGCCGCGACGATATGTTCTCAGTGTTGGATCCGTTTTTTTCGACTCGGAGCTTGAGCCAGGTTCTGAACATGATGGATCAGTTCATGGACAATCCGTTCCTCTCTGCGTCGCGCGGAATCGGAGCTGGAGCTGGAGTTCGTCGCGGATGGGACGCGAGAGAGACAGAGGATGCTCTGCTTCTCCGCGTGGACATGCCTGGGCTTGGCAAGGAAGACGTGAAGATCTCCGTGGAGCAGAACACTCTCACAATTAGAGGTGAAGGTGCTAAAGAAGGTGAGGAGGAAGAGAGCGCTCGTCGCTACACTAGCAGGATTGACTTGCCGGACAAGCTTTACAAGATTGACCAGATCAAAGCTGAGATGAAGAATGGTGTGCTCAAGGTCGTTGTGCCGAAGATGAAGGAGGAGGAGAGGAGCGATGTGATCAATGTCAAGGTTGAATAG 630 0.5524 MASSPAVKRFLSSSLLSRSLLRPAAFASHSFNTNAVRQYDDHADDHNVDVDRRSERSFPRVARRDDMFSVLDPFFSTRSLSQVLNMMDQFMDNPFLSASRGIGAGAGVRRGWDARETEDALLLRVDMPGLGKEDVKISVEQNTLTIRGEGAKEGEEEESARRYTSRIDLPDKLYKIDQIKAEMKNGVLKVVVPKMKEEERSDVINVKVE 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3197 209 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 103 209 IPR002068 -
Ssu3g3197 209 PANTHER 23.6 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 208 - -
Ssu3g3197 209 Gene3D - 61 208 IPR008978 -
Ssu3g3197 209 SUPERFAMILY HSP20-like chaperones 80 200 IPR008978 -
Ssu3g3197 209 CDD ACD_sHsps-like 113 194 - -
Ssu3g3197 209 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 208 IPR044656 -
Ssu3g3197 209 Pfam Hsp20/alpha crystallin family 114 208 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3197 Ssu-Chr3 88121112 88121877 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3197 K13993 - gmx:547852 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3197 3 88121112 88121877 Ssu3g3197 3 88121112 88121877 ECH