Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu3g3192 | ATGGCTGTTGAGACTTCCGATAAACCAAATTTACCACATgattttgatgatgatgaagatgggCCACTAATTTACAAAAGGTACTCATCATCTAAGAAAAATCAATTGCATTCAGAAGTAAGGAAGTCAAGCTCTCACAGTCATGATAGACAGATTTCTAATGCTCCTTCTTCAAATGGCCAAACTTCTAGCATGCCGAAAGGTAATACTGTCCCATCTGCTAAGCCATCACCCATGAAGCCTTCTGTAGGTATCTCAAAAGCTTCGAATTCTCTTGTCAACACCTCCTCTATGAAGCTGCCTGTAGCAAATTCAAAATCACCTTCATTGGGAGATAAACAAAAGCCTCTTTCGGAACAGAAAAGGTCCATTGATGTTAAGGAGGAACCAAAATCTATTGAACGTTGTGCTAATGATTACTATGAAGATTCAGAAGATGATGAGGATAATAAACCATTGAGTTTTAGGTTGAAGAACTCTAACCATGATAACAAAGCAACCACTGTTGTTGTCAAGAAATCTTCTGAAGActctgatgatgatgatgatgtccCTTTGGCAAAAAAGTTATTCCGAAATTCCAATTTGGGAACAACTAGCAGTAACCATAATGTCTCTAATCAGAAGAAGCCTATTTCTAAAATTCAGAAAGAGCGGCAAAATGGTTCTGGCTCAAGTAATAAACAGGATAGGCCATCTCCATTGCCAGCTAAGAGACCCCTAGATAATAGTAATTCTTTGCACCCCTCTGTTAAGAAGTCAAAGGTCTCAGATCCAGCTGCATCTATCAAAACTAAGCCAGTCTCTGTGAAACATGAACTGAAGGTAGAGGATGACGACGACGATGATCATATTCCTATTTCCCAGAGAATAAAGAAGTCGGCCCCATCAAGTGATAAAGCATTTTCCACGAAGAAGGTGTTGACAAAGGTTACTAAAGTTAACAAGTCTAATTCAAAACCTTTTAAGAAACAGGTCAAGAAGACGTTTAAAAAATCAGGCAGTGGTTCAGAATATTCCAAATCTACAAAACTTCTTCCTAGCTCTGGTGATGGGCAGAAAAAATGGACTACTTTGGTTCACAATGGTATCATTTTCCCTCCTCCATACCAGCCACATGGGGTAAAGATGTTCTATAAGGGTAAACCAGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCAGTCATGCGAGATACAGAGTACATGCAGAAAGATAGATTCAAGGAAAATTTCTGGACTGACTGGCGAAAGTTGCTTGGAAGAAATCATTTAATCCAGAACTTGAAAGATTGTGATTTTACTCCAATCTATGACTGGTACCAGAGtgagaaggaaaagaagaaacaaatgaCTACAGAAGAGAAGAAGGCCTTgaaggaagagaaaatgaaacaagAGGAGAAATACATGTGGGCTATTGTCGATGGTGTTAAAGAGAAGgtTGGGAATTTTAGAGTTGAACCACCAGGATTGTTCCGTGGCCGAGGAGAGCACCCCAAGATGGGAAAATTGAAAAGGCGCATTCGTCCAGGTGATATCACAATTAATATTGGAAAGGATGCCCCAATTCCTGAATGTCCTATTCCTGGTGAAAGGTGGAAGGAGATAAGACATGATAATACAGTTACTTGGTTAGCCTTTTGGAATGACCCTATCAATCCGAAgttattcaaatatgtgtttctGGCTGCTAGTAGTTCCTTGAAGGGACAAAGCGACAAGGAAAAGTATGAGAAAGCTAGGATGTTAAAGGATTATATAGGGAATATTAGGTCTGCATACACGAAAGATTTTACCAGTAAAGATATTACAAAGCAACAAATTGCTGTTGCTACCTATCTTATTGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACGGTTGGTTGCTGCACATTAAAAGTAGAGAATGTAACAAGAGAACCCCCCAACAAACTGAAGTTTAACTTCCTTGGTAAAGATTCTATCAAGTATGAAAATACAGTTGAGGTTGAGCTTCCTGTATATAATGCAATTTTGAAGTTCCAAAAAGATAAACGCCCTGGTGATGATCTTTTCGATAAGCTGGATACAAGTAAATTAAATGCTCATCTGAAGGAGCTCATGCCCGGTCTAACAGCAAAAGTCTTCCGTACATTCAATGCATCGATCACATTGGATGATATGTTGAATAAGGACACTAAAGATGGAGATGTTGGGGAAAAGATTGTTGTTTATCAGCATGCAAATAAACAGGTTGCTATCATTTGTAATCATCAACGTAGTGTTTCAAAATCTCATGGTGCACAAATGTCAAAGTTAACTGAAAAAATTGATGAACTTAAGGCTGTTCTGAAGGAGCTGAAAACGGATTTAGACAGGGCAAGGAAAGGAAAGCCCCCTTCGAAGAGTTCAgatggaaagagaaaaaagaacttATCTCCTGAAGCGCTAGAAAAAAAGATAACTCAAACCAAtgcaaaaattgagaaaatgcAACGTGATATGAAGACAAAAGAAGATCTGAAAACTGTGGCATTAGGCACATCCAAGATAAACTACCTTGACCCTAGGATTACAGTTGCCTGGTGCAAGCGGCATGAGGTTCCTATTGAAAAGATTTTCAACAAATCTCTGCTGGCGAAATTCTGTTGGGCAATGGATGTGGATCCTGACTTCAGATTCTGA | 2697 | 0.3708 | MAVETSDKPNLPHDFDDDEDGPLIYKRYSSSKKNQLHSEVRKSSSHSHDRQISNAPSSNGQTSSMPKGNTVPSAKPSPMKPSVGISKASNSLVNTSSMKLPVANSKSPSLGDKQKPLSEQKRSIDVKEEPKSIERCANDYYEDSEDDEDNKPLSFRLKNSNHDNKATTVVVKKSSEDSDDDDDVPLAKKLFRNSNLGTTSSNHNVSNQKKPISKIQKERQNGSGSSNKQDRPSPLPAKRPLDNSNSLHPSVKKSKVSDPAASIKTKPVSVKHELKVEDDDDDDHIPISQRIKKSAPSSDKAFSTKKVLTKVTKVNKSNSKPFKKQVKKTFKKSGSGSEYSKSTKLLPSSGDGQKKWTTLVHNGIIFPPPYQPHGVKMFYKGKPVDLTPEQEEVATMYAVMRDTEYMQKDRFKENFWTDWRKLLGRNHLIQNLKDCDFTPIYDWYQSEKEKKKQMTTEEKKALKEEKMKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPGDITINIGKDAPIPECPIPGERWKEIRHDNTVTWLAFWNDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIGNIRSAYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREPPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKDKRPGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTFNASITLDDMLNKDTKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHGAQMSKLTEKIDELKAVLKELKTDLDRARKGKPPSKSSDGKRKKNLSPEALEKKITQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFCWAMDVDPDFRF | 898 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu3g3192 | 898 | SUPERFAMILY | DNA breaking-rejoining enzymes | 569 | 895 | IPR011010 | GO:0003677 | |
| Ssu3g3192 | 898 | Coils | Coil | 825 | 845 | - | - | |
| Ssu3g3192 | 898 | Gene3D | Topoisomerase I; Chain A, domain 3 | 569 | 717 | IPR014711 | GO:0003677|GO:0003917|GO:0006265 | |
| Ssu3g3192 | 898 | MobiDBLite | consensus disorder prediction | 1 | 298 | - | - | |
| Ssu3g3192 | 898 | MobiDBLite | consensus disorder prediction | 795 | 826 | - | - | |
| Ssu3g3192 | 898 | CDD | Topo_IB_C | 575 | 768 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Ssu3g3192 | 898 | PRINTS | Eukaryotic DNA topoisomerase I signature | 495 | 504 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Ssu3g3192 | 898 | PRINTS | Eukaryotic DNA topoisomerase I signature | 634 | 648 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Ssu3g3192 | 898 | PRINTS | Eukaryotic DNA topoisomerase I signature | 714 | 728 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Ssu3g3192 | 898 | PRINTS | Eukaryotic DNA topoisomerase I signature | 611 | 630 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Ssu3g3192 | 898 | PRINTS | Eukaryotic DNA topoisomerase I signature | 656 | 672 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Ssu3g3192 | 898 | PRINTS | Eukaryotic DNA topoisomerase I signature | 851 | 862 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Ssu3g3192 | 898 | Gene3D | - | 718 | 898 | IPR014727 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Ssu3g3192 | 898 | PANTHER | DNA TOPOISOMERASE I | 138 | 898 | - | - | |
| Ssu3g3192 | 898 | MobiDBLite | consensus disorder prediction | 49 | 71 | - | - | |
| Ssu3g3192 | 898 | Coils | Coil | 774 | 801 | - | - | |
| Ssu3g3192 | 898 | Pfam | Eukaryotic DNA topoisomerase I, catalytic core | 569 | 794 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Ssu3g3192 | 898 | MobiDBLite | consensus disorder prediction | 268 | 289 | - | - | |
| Ssu3g3192 | 898 | CDD | Topoisomer_IB_N | 355 | 567 | - | - | |
| Ssu3g3192 | 898 | MobiDBLite | consensus disorder prediction | 319 | 349 | - | - | |
| Ssu3g3192 | 898 | Gene3D | DNA Topoisomerase I, domain 2 | 351 | 566 | IPR013030 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Ssu3g3192 | 898 | MobiDBLite | consensus disorder prediction | 9 | 48 | - | - | |
| Ssu3g3192 | 898 | Coils | Coil | 444 | 472 | - | - | |
| Ssu3g3192 | 898 | MobiDBLite | consensus disorder prediction | 192 | 232 | - | - | |
| Ssu3g3192 | 898 | MobiDBLite | consensus disorder prediction | 169 | 188 | - | - | |
| Ssu3g3192 | 898 | Pfam | Eukaryotic DNA topoisomerase I, DNA binding fragment | 355 | 566 | IPR008336 | GO:0003677|GO:0003917|GO:0006265 | |
| Ssu3g3192 | 898 | SMART | topeu | 495 | 871 | IPR013499 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Ssu3g3192 | 898 | MobiDBLite | consensus disorder prediction | 332 | 349 | - | - | |
| Ssu3g3192 | 898 | MobiDBLite | consensus disorder prediction | 83 | 114 | - | - | |
| Ssu3g3192 | 898 | Pfam | C-terminal topoisomerase domain | 830 | 898 | IPR025834 | - | |
| Ssu3g3192 | 898 | ProSitePatterns | Eukaryotic DNA topoisomerase I active site. | 844 | 862 | IPR018521 | GO:0003677|GO:0003917|GO:0006265 | |
| Ssu3g3192 | 898 | Gene3D | - | 371 | 454 | IPR013034 | GO:0003917|GO:0006265 | |
| Ssu3g3192 | 898 | SUPERFAMILY | Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment | 350 | 567 | IPR036202 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Ssu3g3192 | 898 | MobiDBLite | consensus disorder prediction | 115 | 139 | - | - | |
| Ssu3g3192 | 898 | PANTHER | DNA TOPOISOMERASE I | 138 | 898 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu3g3192 | K03163 | - | gmx:100799837 | 1541.55 |