Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3188 ATGGAAGAGGCAAAGGCATTGCACCAGcaacagcagcagcagcaacaacaacttCTGTTACAAcaacagcagcagcagcaacagcaacaacatTTTCTGCTCTTACAGCAGTTGCAAAAGCAGCAACATCAACAACAGCAAGCAGCCGCCATTTCTCGTTTCCCTTCCAACATTGACGCTCACTTGCGTCCTATCAGACCCCTCAATCTTCAAcaaaaccctaaccctaacccCAATCCCACCCCCAACCCTAACCCTAATCCCATCCTCAATTTGCATCAGAACCCTAATTCCAACCATCTGCCGCCGCAGCAGCCGCAACAACCGCCACAACAGCAAccgcagcagcagcagcagcagaaGATGATTCGACCCGGAAACCAGATGGAGCTCCAGATGGCATACCAAGACGCGTGGCGGGTCTGCCACCCAGACTTCAAGCGACCCTTCTCTTCTCTTGAAGATGCCTGCGAGAGATTATTGCCATATCATGTTGTGGCGGActatgaagaagaagaggatgaTAGGATACTTGATTCTGACACCACAGGCCAGATGCTTTCACGGTCCCAGCAGTGGGATAATAATATTACTGCTAAAATTGCTGAGTTCACAGCAACTTTTGAGAAACAAGCACTTGCCTTCAATATAATAACCCAAAAGAGAGGTTTGGGGGAATTCCGGTCTGAGGAGAGATTGATGATTGAGCAGGCACTTCTTCAAGAAGAAAAACGGGCTAATTATGAATTAAGAGCAGAATTAGAGTCCAGAGAGAAGGCTGGTCGTGAAGCCCATGAGGCTAAACTACGGATGGCAGCAATGTTTCAAGCAGAGCAGGCTCGGGCAGATTTACAGTCTCATGCTGAAATGATGTCTCGAGCTCCCATGAGAGGGAGTGCACTTGGGTCCCAAGGCAATGACATTGTGATTGGCCATGACATGGGAGAGCAGGATCAGGGAGGTAACCCAGGTGAGATGATTAATGGATGGGGAAACAATACTCAGAGAGATGAGAAGGAGCCATCTGAGGATTTCTTGAATGATGAAGCCGAAAATGGAGACACTGGAACCCAGGATGGCTGGCGTGAAGTTGGTGAATTTGATTTGAATGCTAGGTGA 1119 0.4307 MEEAKALHQQQQQQQQQLLLQQQQQQQQQQHFLLLQQLQKQQHQQQQAAAISRFPSNIDAHLRPIRPLNLQQNPNPNPNPTPNPNPNPILNLHQNPNSNHLPPQQPQQPPQQQPQQQQQQKMIRPGNQMELQMAYQDAWRVCHPDFKRPFSSLEDACERLLPYHVVADYEEEEDDRILDSDTTGQMLSRSQQWDNNITAKIAEFTATFEKQALAFNIITQKRGLGEFRSEERLMIEQALLQEEKRANYELRAELESREKAGREAHEAKLRMAAMFQAEQARADLQSHAEMMSRAPMRGSALGSQGNDIVIGHDMGEQDQGGNPGEMINGWGNNTQRDEKEPSEDFLNDEAENGDTGTQDGWREVGEFDLNAR 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3188 372 Coils Coil 240 260 - -
Ssu3g3188 372 MobiDBLite consensus disorder prediction 67 123 - -
Ssu3g3188 372 MobiDBLite consensus disorder prediction 71 89 - -
Ssu3g3188 372 PANTHER GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE 1 12 372 - -
Ssu3g3188 372 Pfam Conserved region of unknown function on GLTSCR protein 137 251 IPR015671 -
Ssu3g3188 372 MobiDBLite consensus disorder prediction 316 372 - -
Ssu3g3188 372 Coils Coil 1 28 - -
Ssu3g3188 372 MobiDBLite consensus disorder prediction 7 29 - -
Ssu3g3188 372 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT-LIKE PROTEIN 12 372 - -
Ssu3g3188 372 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3188 - - gmx:100813084 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3188 3 88028058 88033398 Ssu3g3188 3 88028058 88033398 ECH