Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3186 ATGGCATTGGAGCAGCACGGGAAGGAGGAGAAACTGCAGAAGGGAATCGCCGAGTTCTACGACGAGTCATCTAGGATATGGGAGGATATTTGGGGCGACCACATGCACCACGGCTTCTACGACCCGGATTCCACCGTTTCTGTTTCGGATCACCGCGCCGCTCAGATCCGAATGATCCAAGAGTCTCTTCGTTTTGCCTCTTTTTCtgAGGACCGTACTAAATGGCCCAAGAGCATAGTTGATGTCGGGTGTGGCATAGGCGGCAGCTCCAGATACCTTGCCAAGAAATTTGGGGCAAGGAGCGTAGGCATCACTCTCAGTCCTGTTCAAGCTGAAAGAGCAAATGCTCTTGCTGCTGCTGAAGGATTGGCTGACAAGGTTTCCTTTCAAGTTGCTGACGCTCTAGAGCAACCATTCCCGGACGGGCAGTTTGATCTGGTGTGGTCCATGGAGAGTGGGGAGCATATGCCTGACAAAGCAAAGTTTGTTGGTGAGTTAGCTCGGGTAGCAGCACCAGGTGCCAccataataatagtaacatgGTGCCACAGGGATCTTGGCCCTGCTGAAGAATCCCTACATCCATGGGAGAAAGATCTCTTGAAGAGGATTTGCGATGCATATTACCTCGCAGCCTGGTGCTCAGCTGCTGATTATGTCAAATTGCTCCAATCCCTGTCACTTCAGGACATCAAGTCAGCAGATTGGTCTCCCTTTGTCGCTCCGTTTTGGCCAGCAGTAATACGCTCGGCGTTGACATGGAATGGCCTCACTTCACTCTTGCGCAGCGGACTAAAAACCATAAAAGGAGCTTTGGCTATGCCATTGATGATAAAAGGATACAAGAAGGATCTGATTAAGTTTGCCATCATTACATGTCGAAAGCCTGAATAA 894 0.4922 MALEQHGKEEKLQKGIAEFYDESSRIWEDIWGDHMHHGFYDPDSTVSVSDHRAAQIRMIQESLRFASFSEDRTKWPKSIVDVGCGIGGSSRYLAKKFGARSVGITLSPVQAERANALAAAEGLADKVSFQVADALEQPFPDGQFDLVWSMESGEHMPDKAKFVGELARVAAPGATIIIVTWCHRDLGPAEESLHPWEKDLLKRICDAYYLAAWCSAADYVKLLQSLSLQDIKSADWSPFVAPFWPAVIRSALTWNGLTSLLRSGLKTIKGALAMPLMIKGYKKDLIKFAIITCRKPE 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3186 297 Gene3D Vaccinia Virus protein VP39 21 295 IPR029063 -
Ssu3g3186 297 CDD AdoMet_MTases 79 181 - -
Ssu3g3186 297 PANTHER METHYLTRANSFERASE 6 292 - -
Ssu3g3186 297 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 12 296 IPR029063 -
Ssu3g3186 297 PANTHER CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE 6 292 - -
Ssu3g3186 297 ProSiteProfiles SAM-dependent methyltransferase gamma-tocopherol (gTMT)-type family profile. 1 297 IPR025774 GO:0008168|GO:0032259
Ssu3g3186 297 Pfam Methyltransferase domain 80 178 IPR013216 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3186 Ssu-Chr3 88004693 88009610 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3186 77 191 Acyl Lipid Metabolism Gene Families AT3G18000 35.652 1.09e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3186 K05928 - gmx:100792443 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3186 3 88004693 88009610 Ssu3g3186 3 88004693 88009610 ECH