Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3180 ATGGGAATTGTTGGCATTGAAATTAACGGGAATTCTGCTTCTGCTTCTGCTTTGCATTATGGTGTTAATTCGTTCTCTTCATATACGGTTCCCATTTATTTGAGACCCTTTTTTGGGAATGCTTTGAACGCCAGGGTTGCGGGGAAGATTCGGGTCTCTCAAGCTCGAAAGCCCAATTTCGGAGCAGTTATTGCTTCACTGAGTGGTGGCTCTAATGCTGGGTTGATTAGTGACGCGATTCTTCCCAAGGACTCTGAATTTAAGCCATCGTTCGACGAATATTTGAAGGCTATGGAATCTGCCAAAGCTGTTAGGGGCAGGAAGCGTGCTGCCACTGCTCAGAAACAGAAGAGGGTAAAGGGTGATGAAggaaataacattaaaaaatttaatagcgTTGGAGagaaaattgatagaaaagATGGGCTTGTAGGTGCTAAAGAAGATGTGGCATCAAAAGTTGATGAAGCAGTTGTGTACAAAGAAGGTTCCTCCAGAAGTAACGGTAAGGCCAGAAGAACACCAACTAAAGGATTTAGAAGTGAAAATGATGGGAAAGAAAGCAACCTTGATGTAAAGGCAAAGCAGAAAAATGGCTCATTGAAACGCCAGAGTCATAGTTTAGAATTAGAATCTGATGACCGCAGTGCAATTAAGAGTCAAGATAAAAGTGGAAGTGGAAGGATGAGTAAGAGCATAATTAGGTCTAGTTTGAATGGTAGCCATGGGAGTGCAAAAGAGAGGGGAGTTACTCATGATTTATATTCTTCAAAGATGTTGCGAGAAAAGGTTGTTGGTAGCAGACAAAGGGATTACAACACACAGGGTAAAACCCCTGATAGAGATAAAATTGTAGCTAGACAAGAAGTTAAGGATAGAGGGCTTGGTAGAAGACATACTGAAAATGGAAGTTTGATAAATAGAAATGGACTGTCAAATGTCAAATTGAATGGAAGCTGTAAGCAGTTCATTGATAGGGGTTATGATTCTGATAACTTGGAGGTGGACCGAGCAGCATTCGAGAATCTTGAGGACCCAAACAGTGTTATCAGCAAGTTACAATTTTCACATAAGGAAATGGAGGAGAGAATCCAAAAGCTAGCCAAATCGTTAAATGGTGCAGATATCAATTTACCTGAATGGATGTTTTCTAAGATGATCAGAAGTGCAAGGATCAAATTTTGTGACTATTCCATAACAAGGGTTATCATAATCTTGGGAAAACTAGGAAATTGGCGGCGAGTGATACAGGTCATTGAATGGCTTCAAAAGCGTGAACGTTTCAAGTCCCATAAGCTAAGGCATATATATACTGCTGCTCTTGATGCACTTGGAAAGTCAAGGAGACCTGTAGAGgcactaaatatatttcatgcaATGCAGCAACATATGTCCTCATATCCTGATTTAGTAGCTTATCATAGTGTTGCTGTTACTCTTGGACAAGCAGGGCACATGAAGGAACTCTTTGATGTGATTGATATTATGCGATCGCCACCTAAGAAGAAGTTCAAAACAGGGATATTTGAGAACTGGGACCCAAGGCTGGAACCAGATATTGTAGTCTATCATGCAGTCCTTAATGCTTGTGTTAAGCGGAAACAATGGGAAGGGGCCTTTTGGGTTTTACAGCAGTTAAAGAAGCAAGGACTACCACTTTCTGCTGTGACTTATGGCCTAGTTATGGAGGTGATGTTTTCATGTGGCAAGTATAACTTGGTTCACGaatttttcagaaaatttcaGAAGTCTTTCTTTCCCAATTCATTGACATATAGAGTTCTTGTAAATACACTTTGGAAAGAGGGAAAAACTGATGAGGCTACATTGGCTGTCCAAGAAATGGAAAAACGTGGAATTGTAGGTTCTGCTTCTCTTTATTATGATCTAGCTCGATGCCTCTGTGCAGCTGGAAGAAGTCATGAGGCACTAAAGCAGATGGACAAGATATGTAAGGTTGCAAATAAACCACTGGTAGTGACCTACACTGGCTTGATGCAAGCGAGTCTAGACTCTGGAAACATTCAAGATGGGGcttatatttttgagaaaatgaaggaaatttgTGCTCCAAATCTGGTTACTTGTAACATAATGCTGAAAGCTTACTTGGAACATGGCATGTTCCAAGAAGCTAAAGCGTTGTTTGAGCAGATGTCAGAAAATGCAAATCGTCTGAGGGTAAATACTGATTACAAAATGCTGGTGGTACCAGATACATACACATTCAACACCATGTTAGATGCATGTGTTTCAGAGAAGAGATGGGATTATTTTGATCATGTCTATCAAAGGTTGCTGTACCATGGTTACCACTTCAATCCAAAACGTCATCTTCGAATGATATTGGAGGCTTTAAAAGCTGGAAAGGAACGGCCTTTGGAGATAACATGGAAGCACTTAACCGATACAGATCATATTCCACCTGTTCCTCTGATCAAGGAGAGGTTCTGTGCAAAGCTTGAGAAAGATGACTATGTTGCTGCTCTCACATGTATCACCAACAATCCCCCAAAAGACTTGCAGCCATTTTCCAAGAAGTCTTGGTTGAATCTATTCAAAGAAAATTCTCAACGGTTTCGGAAGGAAACTATTGTTAGACTAATGAACGAGGCCAGCAATGTAGTTTCCAATAATAGTTTGCCAAATCCAACActtgagtatttaatgcaatcatgcaaagaatttttttttgccacTGACCTCAATGCAGCTGACATGGATTCAATGAAAAATGTATTTGTGGTAGAGAGTAAGCTGATAGTAGCCAACTCTAGATGA 2781 0.3873 MGIVGIEINGNSASASALHYGVNSFSSYTVPIYLRPFFGNALNARVAGKIRVSQARKPNFGAVIASLSGGSNAGLISDAILPKDSEFKPSFDEYLKAMESAKAVRGRKRAATAQKQKRVKGDEGNNIKKFNSVGEKIDRKDGLVGAKEDVASKVDEAVVYKEGSSRSNGKARRTPTKGFRSENDGKESNLDVKAKQKNGSLKRQSHSLELESDDRSAIKSQDKSGSGRMSKSIIRSSLNGSHGSAKERGVTHDLYSSKMLREKVVGSRQRDYNTQGKTPDRDKIVARQEVKDRGLGRRHTENGSLINRNGLSNVKLNGSCKQFIDRGYDSDNLEVDRAAFENLEDPNSVISKLQFSHKEMEERIQKLAKSLNGADINLPEWMFSKMIRSARIKFCDYSITRVIIILGKLGNWRRVIQVIEWLQKRERFKSHKLRHIYTAALDALGKSRRPVEALNIFHAMQQHMSSYPDLVAYHSVAVTLGQAGHMKELFDVIDIMRSPPKKKFKTGIFENWDPRLEPDIVVYHAVLNACVKRKQWEGAFWVLQQLKKQGLPLSAVTYGLVMEVMFSCGKYNLVHEFFRKFQKSFFPNSLTYRVLVNTLWKEGKTDEATLAVQEMEKRGIVGSASLYYDLARCLCAAGRSHEALKQMDKICKVANKPLVVTYTGLMQASLDSGNIQDGAYIFEKMKEICAPNLVTCNIMLKAYLEHGMFQEAKALFEQMSENANRLRVNTDYKMLVVPDTYTFNTMLDACVSEKRWDYFDHVYQRLLYHGYHFNPKRHLRMILEALKAGKERPLEITWKHLTDTDHIPPVPLIKERFCAKLEKDDYVAALTCITNNPPKDLQPFSKKSWLNLFKENSQRFRKETIVRLMNEASNVVSNNSLPNPTLEYLMQSCKEFFFATDLNAADMDSMKNVFVVESKLIVANSR 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3180 926 Coils Coil 350 377 - -
Ssu3g3180 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Ssu3g3180 926 Coils Coil 709 729 - -
Ssu3g3180 926 Pfam Pentatricopeptide repeat domain 657 703 IPR002885 -
Ssu3g3180 926 Pfam Pentatricopeptide repeat domain 516 565 IPR002885 -
Ssu3g3180 926 PANTHER OS01G0674700 PROTEIN 26 907 IPR044645 GO:0009658
Ssu3g3180 926 MobiDBLite consensus disorder prediction 106 129 - -
Ssu3g3180 926 MobiDBLite consensus disorder prediction 175 221 - -
Ssu3g3180 926 PANTHER OS01G0674700 PROTEIN 26 907 - -
Ssu3g3180 926 Gene3D Tetratricopeptide repeat domain 650 802 IPR011990 GO:0005515
Ssu3g3180 926 TIGRFAM PPR: pentatricopeptide repeat domain 694 722 IPR002885 -
Ssu3g3180 926 TIGRFAM PPR: pentatricopeptide repeat domain 521 554 IPR002885 -
Ssu3g3180 926 TIGRFAM PPR: pentatricopeptide repeat domain 436 469 IPR002885 -
Ssu3g3180 926 SUPERFAMILY TPR-like 504 721 IPR011990 GO:0005515
Ssu3g3180 926 MobiDBLite consensus disorder prediction 246 278 - -
Ssu3g3180 926 Gene3D Tetratricopeptide repeat domain 430 582 IPR011990 GO:0005515
Ssu3g3180 926 Gene3D Tetratricopeptide repeat domain 583 649 IPR011990 GO:0005515
Ssu3g3180 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
Ssu3g3180 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 692 726 IPR002885 -
Ssu3g3180 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 739 773 IPR002885 -
Ssu3g3180 926 Pfam PPR repeat 436 462 IPR002885 -
Ssu3g3180 926 Pfam PPR repeat 591 620 IPR002885 -
Ssu3g3180 926 MobiDBLite consensus disorder prediction 222 244 - -
Ssu3g3180 926 MobiDBLite consensus disorder prediction 161 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3180 Ssu-Chr3 87910198 87922118 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3180 518 749 Glycosyltransferase AT1G05670 21.368 4.81e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3180 - - aprc:113864568 1477.23