Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3170 ATGGTCGCCGAAAGAGAGGTTAACGGTGACGGCAACGGCGTCGGAGAGGGAAGGCTGATATTCACGTACGGAACCCTCAAGAGAGGCTTTTCCAACCACACCCTTCTCCAAGACCTCATTCGCACCGGCGATGCCTCCTTCGTCGGAACCTACCGCACCGCCCACAAATACCCTCTCGTGTGTGGGCCCTACCGGGTCCCCTTTCTCCTCAACCTTCCCGGGTCGGGTCGTCGGGTCCGCGGGGAGCTATACTCCGTCTCCACGCGCGGTCTCGCACGCATGGACGAACTCGAGGGCACCTCACACGCCCACTACGAGCGTCTCCCGATCAAGGCGGTTCCCGCGGGGGAGGAGGGCGAGGGCGAGGGCGACGGCgacgaggaggaggaggaggtggtggaTGGGGAGGCGGCGGCGGCGGGGCTAACGTGCGCGGAGGCGTATTATGCGCACAGGAACTACGCGATGGAGATGTGGAAGAAGAACGGGAAGCGAGGGCTGAGTTGTTACTCGCAGAAAGAGACGATTGGTTATGTGAAGCGCAAAGATAGGCCTCAGCATTTGACCTTCCTCGATCATATTCGCTTCTTCCTTTCCTCTTAG 603 0.5821 MVAEREVNGDGNGVGEGRLIFTYGTLKRGFSNHTLLQDLIRTGDASFVGTYRTAHKYPLVCGPYRVPFLLNLPGSGRRVRGELYSVSTRGLARMDELEGTSHAHYERLPIKAVPAGEEGEGEGDGDEEEEEVVDGEAAAAGLTCAEAYYAHRNYAMEMWKKNGKRGLSCYSQKETIGYVKRKDRPQHLTFLDHIRFFLSS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3170 200 CDD GGCT_like 20 115 IPR013024 -
Ssu3g3170 200 PANTHER TROPONIN C-AKIN-1 PROTEIN 14 200 IPR039126 GO:0061929
Ssu3g3170 200 Pfam Gamma-glutamyl cyclotransferase, AIG2-like 20 118 IPR009288 -
Ssu3g3170 200 Gene3D - 15 184 - -
Ssu3g3170 200 PANTHER BNACNNG06060D PROTEIN 14 200 - -
Ssu3g3170 200 SUPERFAMILY Gamma-glutamyl cyclotransferase-like 19 122 IPR036568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3170 Ssu-Chr3 87755082 87755684 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3170 K19761 - gmx:100802936 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3170 3 87755082 87755684 Ssu3g3170 3 87755082 87755684 ECH