Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3168 ATGATACTAGTATCCCTTGTGTTTGCAAGAAAAAAGGTAGAAGAAAATGAGCAACTTTCGGGTACCCGACCCAGACAAGTCAAACCGTACCCACAGACACGGAAGTGGTCTGGTCTCTTTCTCTTAAGCCCTAAAACCCTATTAACCAGTTACTTCAACTCGCCACTTAGCGGAAACCTCTACAAACATTGTCTGCAAGATGAATTTCAACAACCTGAAGGTCCCAAGGTTCCTGGTGGCGGAGTCTCTGCTTTGCTTAAAGTTAGCATTATTGGTGGGCTTGCTGTATATGGGGCTGCAAACAGCTTATACAATGTTGAGGGAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTTGGTGTCAAAGATAAGGTCTATCCTGAAGGGACACATATTATGATTCCTTGGTTTGAGAGGCCTGTGATCTATGATGTTCGTGCACGACCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGGTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAATTACCGACAATTTATCGAACCCTGGGTGAGAATTATAATGAAAGGGTGCTGCCTTCTATTATACATGAGACTCTCAAAGCTGTAGTTGCTCAGTATAATGCCAGTCAGCTCATTACTCAGAGAGAGGCTGTTAGTCGAGAAATAAGGAAGATATTGACTGAGAGGGCCTCCCAGTTTAACATTGCTTTGGATGATGTGTCAATCACAAGTTTGACATTTGGGAAGGAATTTACAGCTGCAATTGAAGCCAAGCAGGTTGCTGCTCAAGAAGCTGAGAGAGCTAAATTTGTTGTAGAAAAAGCTGAACAGGACAAAAGAAGTGCTGTTATTAGAGCTCAGGGAGAAGCCAAGAGCGCCCAGTTGATTGGTCAAGCTATTGCCAATAATCCTGCATTTATCACCTTAAGGAAAATTGAAGCTGCAAGGGAAATTGCTCAAACGATTTCAAATTCTGCCAACAAGGTTTACTTGAATTCAGATGATCTCTTACTGAATCTTCAGGAGTTAAACTTGGAGCCCAGTGGGAAGAGATAG 1068 0.4326 MILVSLVFARKKVEENEQLSGTRPRQVKPYPQTRKWSGLFLLSPKTLLTSYFNSPLSGNLYKHCLQDEFQQPEGPKVPGGGVSALLKVSIIGGLAVYGAANSLYNVEGGHRAIVFNRVVGVKDKVYPEGTHIMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASQFNIALDDVSITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAVIRAQGEAKSAQLIGQAIANNPAFITLRKIEAAREIAQTISNSANKVYLNSDDLLLNLQELNLEPSGKR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3168 355 Coils Coil 262 282 - -
Ssu3g3168 355 PRINTS Prohibitin signature 233 252 IPR000163 GO:0016020
Ssu3g3168 355 PRINTS Prohibitin signature 164 183 IPR000163 GO:0016020
Ssu3g3168 355 PRINTS Prohibitin signature 258 281 IPR000163 GO:0016020
Ssu3g3168 355 PRINTS Prohibitin signature 281 297 IPR000163 GO:0016020
Ssu3g3168 355 PRINTS Prohibitin signature 146 162 IPR000163 GO:0016020
Ssu3g3168 355 PRINTS Prohibitin signature 187 205 IPR000163 GO:0016020
Ssu3g3168 355 PRINTS Prohibitin signature 210 226 IPR000163 GO:0016020
Ssu3g3168 355 Pfam SPFH domain / Band 7 family 105 280 IPR001107 -
Ssu3g3168 355 Gene3D Band 7 domain 131 265 IPR036013 -
Ssu3g3168 355 PANTHER PROHIBITIN-1, MITOCHONDRIAL-LIKE 74 352 - -
Ssu3g3168 355 SMART PHB_4 102 263 IPR001107 -
Ssu3g3168 355 PANTHER PROHIBITIN 74 352 IPR000163 GO:0016020
Ssu3g3168 355 SUPERFAMILY Band 7/SPFH domain 134 270 IPR036013 -
Ssu3g3168 355 CDD SPFH_prohibitin 103 297 IPR000163 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3168 Ssu-Chr3 87729482 87734575 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3168 K17081 - gmx:100811958 520.005