Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3163 ATGTCTCTGTCTATTCTTCGTATCTGCTCTTCGCCTCACCTTTCTACCTCTCTTCTCCTTCCAACTTCTTCTCTTTCCGTTTGCCCTTCTTTCCTTCGCAAATTACCAAATGGCCGCACTCCCCACTCTGTTTTGTGCTGCTGCAGGGACGCCTCGGCTTCCGCGCGAGGTGGCCTTGGAGTCCCCGAGGGTGCGGAATGTGACAGTGGCTGCGAAGAAGATGATGAACCCATGAGGGCCAATTACAAGGAAGAAGACGAAGACGAAGAAGCGGCTCTTAGCTCCTTAGTTTTGCCTGAAAGATGGGATGTATTGGGTCTTGGTCAAGCCATGGTAGACTTCTCTGGCACGGTTGATGATAATTTCCTGAAGAATTTGGGATTAGAGAAGGGAACGCGGAAAGTAGTAAATCATGAGGAAAGAGGTAGAGTTTTGCAGGCTATGGACGGGTGCAGCTATAAAGCTGCGGCTGGTGGATCTCTTTCTAATACCTTAGTTGCCCTCGCAAGGCTTGGAGGTCGCTCCATCAAAGCTCCTGCTATAAATGTGGCAATGACTGGCAGTGTAGGGAGTGATCTATTGGGTGGCTTCTACAGgGAAAAATTACGCCGAGCAAATGTGCAATTTCTTTCCGCACCTATCAAGGATGGGACAACTGGAACAGTTATTGTTCTCACAACTTCAGATGCCCAGCGCACAATGCTTGCATATCAGGGCACATCCTCAACTGTTAACTATGATGCATCCTTGGCTAGTGCAGTTTCCAAGACTAACATACTTGTCGTTGAAAGTTATCTATTTGAACTTCCTGATACTATTAAAACAATAACTGAAGCATGTGAGAAAGCACGGAGGAATGGTGCCTTGGTTGCAATAACAGCTTCAGATGTCTCCTGCATTGAGAGACACTTTGATGATTTCTGGGAAATTATTGGGAATTGTGTGGATTTAGTGTTTGCAAATGGTGATGAGGCCAGAGCTCTTTGTAATTTTGAAGCAAAGCAAAGTGCTGCTTCAGCTGCAAGGTATCTGAGCCACTTTGTTCCACTAGTATCCGTTACTGATGGTCCTACAGGCTCTTACATAGGTGTAAAAGGAGGAGCCGTATATATCCCTCCTTCTCCATGTGTTCCAGTAGATACTTGTGGTGCTGGGGATGCATATGCTTCTGGCATACTCTATGGTCTTTTAAGAGGCGTATCAGATTTGAGAAGTATAGGCACATTAGCAGCTAAGGTTGCTGCCACTGTTGTTGGACAACAGGGAACGCGGCTTAGAATTGCAGATGCAGTCAAATTGGCTGAATCTTTCGCATTTCAACTTGATTCATCCTCTGTTGGCACTGATCATATTTCCAGCGTCTAA 1365 0.4601 MSLSILRICSSPHLSTSLLLPTSSLSVCPSFLRKLPNGRTPHSVLCCCRDASASARGGLGVPEGAECDSGCEEDDEPMRANYKEEDEDEEAALSSLVLPERWDVLGLGQAMVDFSGTVDDNFLKNLGLEKGTRKVVNHEERGRVLQAMDGCSYKAAAGGSLSNTLVALARLGGRSIKAPAINVAMTGSVGSDLLGGFYREKLRRANVQFLSAPIKDGTTGTVIVLTTSDAQRTMLAYQGTSSTVNYDASLASAVSKTNILVVESYLFELPDTIKTITEACEKARRNGALVAITASDVSCIERHFDDFWEIIGNCVDLVFANGDEARALCNFEAKQSAASAARYLSHFVPLVSVTDGPTGSYIGVKGGAVYIPPSPCVPVDTCGAGDAYASGILYGLLRGVSDLRSIGTLAAKVAATVVGQQGTRLRIADAVKLAESFAFQLDSSSVGTDHISSV 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3163 454 PANTHER KINASE, PUTATIVE, EXPRESSED-RELATED 73 447 - -
Ssu3g3163 454 CDD adenosine_kinase 101 426 - -
Ssu3g3163 454 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 380 393 IPR002173 GO:0016773
Ssu3g3163 454 Gene3D - 98 431 IPR029056 -
Ssu3g3163 454 Pfam pfkB family carbohydrate kinase 153 425 IPR011611 -
Ssu3g3163 454 SUPERFAMILY Ribokinase-like 102 425 IPR029056 -
Ssu3g3163 454 PANTHER HEXOKINASE FAMILY MEMBER 73 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3163 Ssu-Chr3 87672625 87677421 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3163 - - gmx:100816996 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3163 3 87672625 87677421 Ssu3g3163 3 87672625 87677421 ECH