Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3147 ATGGCGGTGAGATCGGTGAAAGTGAGCAACATCTCTTCAGGTGCAACCGACCAAGATTTGAGGGAATTTCTTACCTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGCGATAATGGAAGTTCCCAAGTTGCGTATGTTACCTTCAGTAATGTAGAGGGGGCAGAAACTGCGGTTCTTCTCTCGGGAGCAGTGGTGTCTGGACAGTCTCTAACCATAGATTTGGCTCCGGATTATGCTTTGCCTGCCTCTGCTGCATCTGCAACACAGACAAGTACTGCTGAGAGTGCTGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCAGCATGCTAGCCAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGGGCGAAAGCCTTTGATGAAAAGCACCAGCTTACTTCCACGGCCACAGCAAAAGTTGTTTCGTTGGACCAGAAGGTTGGTTTTAGTGAAAAGATCAGTGCTGGGACAGTTTTGGTGAATGACAAAGTGAAAGAAATGGATGAGAAATTTCAAGTCTCGGAGAAGACTAAATCAGCAATTTCAGCAGCTGAGCAGTCAGTGACTAATGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTCACGGGTGCTTACAACAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAAAGAGCTAAGGAGAAGGTTTTGGCGCAGGATAATCAAGAAAAGACTGAAGAAGGTCATGTCCACACCACCAGCTCTGAACCTGAACCCACCACACCTAATCAACCCTCCAAACCTGAACCACAACAGGCCACCACAGCTAATGAACCCTCCAAACCTGAACCTCAACAGGCCACGACGGATGGTCAACCTTCCAATCCTGCAACAACTCAAGGTTTGACTCCCTGA 906 0.4724 MAVRSVKVSNISSGATDQDLREFLTFPGKIEYIEMQSDNGSSQVAYVTFSNVEGAETAVLLSGAVVSGQSLTIDLAPDYALPASAASATQTSTAESAESGLRKAEDVVTSMLAKGFILGKDALNRAKAFDEKHQLTSTATAKVVSLDQKVGFSEKISAGTVLVNDKVKEMDEKFQVSEKTKSAISAAEQSVTNAGSAIMKNRYVLTGATWVTGAYNRVAKAAEEVGQRAKEKVLAQDNQEKTEEGHVHTTSSEPEPTTPNQPSKPEPQQATTANEPSKPEPQQATTDGQPSNPATTQGLTP 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3147 301 MobiDBLite consensus disorder prediction 229 250 - -
Ssu3g3147 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 71 IPR000504 GO:0003723
Ssu3g3147 301 SMART rrm1_1 5 74 IPR000504 GO:0003723
Ssu3g3147 301 PANTHER BINDING PARTNER OF ACD11 1 1 255 - -
Ssu3g3147 301 Gene3D - 2 105 IPR012677 -
Ssu3g3147 301 MobiDBLite consensus disorder prediction 264 301 - -
Ssu3g3147 301 MobiDBLite consensus disorder prediction 229 301 - -
Ssu3g3147 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Ssu3g3147 301 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 255 - -
Ssu3g3147 301 SUPERFAMILY RNA-binding domain, RBD 3 78 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3147 Ssu-Chr3 87495241 87497869 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3147 - - gmx:100784398 446.817