Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3144 ATGAGTGACAATTTGATGGGAAGAGTCAACGCTTTGGGTGAGCGCCTCAAAATTGGAGGGGCTGAGGTGGGTCGGAAGATGAGTGCTGGCATGAGTTCTGTGAGCTTCAAGGTCAAGGAGTTTTTCCAGGATTCAAGCCATGCTGATAAACTTGTTGGGGAAGCTACCTCCGAGGCCCTTCACGAGCCTGACTGGGGTATCATTCTTCATCTCTGTGACTTGATCAATGCTGATAAACTTAACACTGCTGAATTGGTACGTGCAATAAAGAAACGGGTCGGAACCAAGAGTCCTAGAGGTCAGTACCTGGCTTTGGTTTTGCTTGAAGCCTTAGTCAAGAATTGTGACAAGGCTTTCTTGGAGGTCGCAACTGAGAGAGTCCTTGATGAGATGGTCAAGCTCATTGATGACCCTCAGACTGATGTTAATAACCGGAATAAGGCTTTGATGATGATTGAGGCATGGGGAGAGTCAACCATTGAGCTTCGCTATCTGCCTGTCTATGCAGAAACTTACAAGAGTTTGAAAGCAAGGGGCATTCGATTCCCTGGCCGTGACAACGAAAGCTTGGCTCCTATTTCCACTATTCCAGAGGCTGACGTGAAGGCTGATGTCAGTCTTGCATATCTTATGCAGCAGCATGATATTCATGTGCAAAGTTTTACGTCTGAACAAACAATGGAAGCTTTTGATGTTGCGAGAAATAGCATTGATCTTCTTTCTACTGTGTTATCTTCTTCAACGCACCAGGATGTTTTAAAgGATGATTTGACCACCACATTAGTACAACAGTGCCGTCAGTCCCAGTCTACTGTCCATAGAATCATTGAGACTGCTGGGGATAATGAAGCACTGCTTTTTGAGGCCTTGAATGTTAATGATGAGATTCAGAAGGGTCTCTCCAAATATGAAGAGTTGAAGATGAAGCAGCCTACTGTTGTTCCACTTGAACCTGAACCGGAACCGGCTATGGTACCTGTTACTATTGAGCCTGACGAGTCACCCCGTTTCACAAAAGAGGAAGCCCTGATTAGAAAGCCAGCTGGTTCGAGAATTGGAGTCCAGGGAGGGAGCCACGATGACATGATGGATGATCTTGATGAGATGATTTTTGGGAAAAAGGGTAGGGATGCATTTGATGGGGGACAAGATCCAAAGAAACAACAATCGTATAAAGATGACCTCATCTCCTTCTAA 1197 0.4528 MSDNLMGRVNALGERLKIGGAEVGRKMSAGMSSVSFKVKEFFQDSSHADKLVGEATSEALHEPDWGIILHLCDLINADKLNTAELVRAIKKRVGTKSPRGQYLALVLLEALVKNCDKAFLEVATERVLDEMVKLIDDPQTDVNNRNKALMMIEAWGESTIELRYLPVYAETYKSLKARGIRFPGRDNESLAPISTIPEADVKADVSLAYLMQQHDIHVQSFTSEQTMEAFDVARNSIDLLSTVLSSSTHQDVLKDDLTTTLVQQCRQSQSTVHRIIETAGDNEALLFEALNVNDEIQKGLSKYEELKMKQPTVVPLEPEPEPAMVPVTIEPDESPRFTKEEALIRKPAGSRIGVQGGSHDDMMDDLDEMIFGKKGRDAFDGGQDPKKQQSYKDDLISF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3144 398 SUPERFAMILY GAT-like domain 181 307 - -
Ssu3g3144 398 Gene3D - 223 315 IPR038425 -
Ssu3g3144 398 CDD GAT_GGA_like_plant 230 306 - -
Ssu3g3144 398 SMART VHS_2 48 179 IPR002014 GO:0035091|GO:0043130
Ssu3g3144 398 MobiDBLite consensus disorder prediction 374 398 - -
Ssu3g3144 398 PANTHER TOM1-LIKE PROTEIN 1 1 398 IPR044836 GO:0035091|GO:0043130|GO:0043328
Ssu3g3144 398 CDD VHS 48 177 - -
Ssu3g3144 398 SUPERFAMILY ENTH/VHS domain 44 183 IPR008942 -
Ssu3g3144 398 ProSiteProfiles GAT domain profile. 221 308 IPR004152 GO:0035091|GO:0043130
Ssu3g3144 398 Gene3D - 39 199 IPR008942 -
Ssu3g3144 398 Pfam GAT domain 234 307 IPR004152 GO:0035091|GO:0043130
Ssu3g3144 398 ProSiteProfiles VHS domain profile. 55 183 IPR002014 GO:0035091|GO:0043130
Ssu3g3144 398 PANTHER TOM1-LIKE PROTEIN 1 1 398 - -
Ssu3g3144 398 Pfam VHS domain 46 179 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3144 Ssu-Chr3 87456357 87458665 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3144 - - ccaj:109799203 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3144 3 87456357 87458665 Ssu3g3144 3 87456357 87458665 ECH