Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3143 ATGCCGCGATCCAAACAGCGTATGACCCTCTTCCTCCTTCTCCTCGgtttctctctcctcttattcctcttctctctctctcccctccgCGCCCCCTCTTCTCCCACCCATCATCTCCGCATCCCCAACGCCGAAACCTCATTCGTGGCCTCCCTCGACCACTTCCTCGCCGGCACTCCCACTCTCCCCGACGACACAGTGCACgaccaacaacaacaagacaCCGCGAAGCTCGACGACGCCGTTTATCGCTCCGACACGGATAGGCTCTACTCGGATCCTTACTATCCCGTGTCCCTTCCCCTTAGGGTTTACGTCTACGACATGCCCCCCAAGTTCACCTACGATTTGCTCTGGCTCTTCAAAAACACCTACAGAGACACCTCCAATCTCACCTCCAACGGCAGCCCCGTTCACCGTCTCGTCGAACAGCACTCCGTTGATTACTGGCTCTGGGCGGATCTCATCGCTCCCCGATCGGAAAGGCTCTTGAGCAGTGTCGTTAGGGAAGCTTTGAAGTGGATCACTGATCAACCTGCGTGGAAACGCTCTGGTGGTAGAGATCACATACTCCCCGTGCATCATCCCTGGTCTTTTAAGTCTGTTCGAAGATACGTGAAGAATGCCATATGGCTGTTGCCAGATATGGATTCCACGGGGAACTGgTACAAGCCTGGACAGGTTTTTCTGGAGAAAGACCTGATTCTCCCTTATGTTCCCAATGTCGAGTTATGTGATGCCAAGTGTTTATCTGAGACGAATCAGAAGAGAAGCACGCTGCTTTTCTTTCGGGGCCGGCTCAAAAGAAATGCGGGAGGAAAGATACGCTCTAAACTTGTAGCTGAATTAAGTGGGGCTGATGGTGTGATTATAGAGGAGGGAACAGCTGGAGAAGGGGGAAAAGAAGCTGCTCAAAGTGGCATGCGAAAGTCTCTATTTTGCTTAAGCCCAGCTGGCGACACTCCATCCTCTGCTAGATTATTTGATGCTATTGTTAGTGGATGCATTCCAGTTATAATAAGTGATGAGCTGGAGCTTCCTTTCGAAGGAATACTTGATTACAGGAAGATAGCATTGTTCATTTCTTCTAAAGATGCTGTAAAGCCAGGTTGgcttttgaaatatttgaaaggCATTAGACCTGCTCATATCAAAGAAATGCAACAAAATCTTGCCAAGtaCTCAAGGCATTTCCTGTATTCTAGTCCTGCTCAATCATTGGGCCCTGAAGACTTGGTTTGGAAAATGATGGCTGGCAAGGTGGTGAACATCAAGCTTCACACCAGAAGGTCTCAACGTGTAGTGGAAGGATCTAGAAGCCGGTGTACTTGTGAATGCGGGCTTACCAACATCACTAATACTGCTTCAATAATTTCTTGA 1380 0.4652 MPRSKQRMTLFLLLLGFSLLLFLFSLSPLRAPSSPTHHLRIPNAETSFVASLDHFLAGTPTLPDDTVHDQQQQDTAKLDDAVYRSDTDRLYSDPYYPVSLPLRVYVYDMPPKFTYDLLWLFKNTYRDTSNLTSNGSPVHRLVEQHSVDYWLWADLIAPRSERLLSSVVREALKWITDQPAWKRSGGRDHILPVHHPWSFKSVRRYVKNAIWLLPDMDSTGNWYKPGQVFLEKDLILPYVPNVELCDAKCLSETNQKRSTLLFFRGRLKRNAGGKIRSKLVAELSGADGVIIEEGTAGEGGKEAAQSGMRKSLFCLSPAGDTPSSARLFDAIVSGCIPVIISDELELPFEGILDYRKIALFISSKDAVKPGWLLKYLKGIRPAHIKEMQQNLAKYSRHFLYSSPAQSLGPEDLVWKMMAGKVVNIKLHTRRSQRVVEGSRSRCTCECGLTNITNTASIIS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3143 459 PANTHER EXOSTOSIN FAMILY PROTEIN 169 448 - -
Ssu3g3143 459 PANTHER EXOSTOSIN FAMILY PROTEIN 6 169 - -
Ssu3g3143 459 Pfam Exostosin family 167 376 IPR040911 -
Ssu3g3143 459 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 169 448 IPR004263 GO:0006486|GO:0016757
Ssu3g3143 459 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 6 169 IPR004263 GO:0006486|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3143 Ssu-Chr3 87449461 87454140 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3143 - - ccaj:109799213 774.622