Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3132 ATGGCATCCGAACTTGAGCAACCCACTCATTCCTCTCTCGCAAAGGAAGCTATGTCATCTGGTGAGATTGGGAGTGCAAGGGAGCCTCTACTTAATGGGGTTCATGATTCTGAAAGCTATTCCATTTCTGCTGCAATTCTCCCATTTCTCTTCCCAGCTTTGGGTGGCTTACTGTATGGCTACGATATTGGTGCCACATCTGCTGCAGCCATTTCCATTGAGTCACCAACACTAAGTGGAGTATCTTGGTACAAGTTGTCTTCCATTGAAATTGGTCTTTTtACTAGTGGATCATTGTATGGTGCCTTAATTGGCTCCGTGTTGGCCTTCAATGTTGCTGACTTCTTCGGCAGAAGAAGGGAGCTGATGTTAGCTGCATTACTATATCTTGTTGGAGCCCTTGTAACAGCATTAGCTCCTAATTTTACTGTATTGGTGCTTGGGAGACTTGTATTTGGCATAGGAATTGGACTGGCAATGCATGCTGCTCCAATGTACATTGCAGAGACAGCTCCAACGCCAATACGTGGACAACTAATCTCTCTAAAAGAGTTCTTTATAGTACTTGGGATGGTTGCAGGATATGGAATTGGTAGCTTGTTCGTAGATACTGTAGCTGGGTGGCGGTATATGTTTGGAGTTAGTAGTCCTATGGTAATAATCATGGGGCTTGGAATGTGGTGGCTCCCACCTTCTCCTAGATGGCTACTTTTACGTGCTATACAGGGAAAAGGGGATGTTCAGAATTTGAAAGACATAGCAATTCGTAGTTTGTGCCGGCTTCGAGGTCAGGCTATTCATGATTCAGCTCCTCAGCAAGTAGATGAGATTCTGGCAGAACTTTCTTATATAGgtgaagaaaaagaagttaCCTTTGGAGAAATGTTCCAAGGAAAATGCTTGAAGGCCCTTTGGATTGGTGCAGGATTGGTCTTGTTTCAGCAGATCACAGGGCAACCAAGTGTGCTCTACTATGCTGCATCAATCCTTCAgAGTGCAGGATTCTCTGGAGCATCTGATGCAACCCGGGTCTCTATTCTCCTTGGGTTTTTTAAGTTGATTATGACTGGAGTTGCTGTTGCCATTGTCGATAGACTTGGAAGGAGGCCTTTACTAATTGGGGGAGTTTCAGGGATGGTGATCTCTTTGTTCCTTCTGGGTTCATATTACATTTTCTTGGATAATGCAGCATTTGTTGCTGTAGTTGGTCTGCTGTTGTACGTAGGCTGTTATCAGATTTCCTTTGGTCCAATTGGTTGGCTAATGATAGCAGAGATTTTCCCCTTGCGCCTAAGAGGTCGAGGACTTAGTATAGCTGTACTCGTCAATTTTGGTGCAAATGCCCTggtgacattttctttttccccaCTGAAGGCGTTAGTGGGAGCAggaattttgttttacatattttgtgcAATAGCCGTGGCATCTCTTGTATTCATATACTTTGTTATACCAGAAACCAAGGGGCTTACACTAGAGGAGATCGAGGCCAAATGCCTTTAA 1506 0.4256 MASELEQPTHSSLAKEAMSSGEIGSAREPLLNGVHDSESYSISAAILPFLFPALGGLLYGYDIGATSAAAISIESPTLSGVSWYKLSSIEIGLFTSGSLYGALIGSVLAFNVADFFGRRRELMLAALLYLVGALVTALAPNFTVLVLGRLVFGIGIGLAMHAAPMYIAETAPTPIRGQLISLKEFFIVLGMVAGYGIGSLFVDTVAGWRYMFGVSSPMVIIMGLGMWWLPPSPRWLLLRAIQGKGDVQNLKDIAIRSLCRLRGQAIHDSAPQQVDEILAELSYIGEEKEVTFGEMFQGKCLKALWIGAGLVLFQQITGQPSVLYYAASILQSAGFSGASDATRVSILLGFFKLIMTGVAVAIVDRLGRRPLLIGGVSGMVISLFLLGSYYIFLDNAAFVAVVGLLLYVGCYQISFGPIGWLMIAEIFPLRLRGRGLSIAVLVNFGANALVTFSFSPLKALVGAGILFYIFCAIAVASLVFIYFVIPETKGLTLEEIEAKCL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3132 501 ProSitePatterns Sugar transport proteins signature 1. 359 375 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu3g3132 501 PRINTS Sugar transporter signature 146 165 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu3g3132 501 PRINTS Sugar transporter signature 401 422 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu3g3132 501 PRINTS Sugar transporter signature 314 324 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu3g3132 501 PRINTS Sugar transporter signature 424 436 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu3g3132 501 PRINTS Sugar transporter signature 56 66 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu3g3132 501 SUPERFAMILY MFS general substrate transporter 49 497 IPR036259 -
Ssu3g3132 501 CDD MFS_GLUT10_12_Class3_like 51 496 - -
Ssu3g3132 501 Pfam Sugar (and other) transporter 51 498 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu3g3132 501 ProSiteProfiles Major facilitator superfamily (MFS) profile. 48 489 IPR020846 GO:0022857
Ssu3g3132 501 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 19 501 - -
Ssu3g3132 501 TIGRFAM SP: MFS transporter, sugar porter (SP) family 14 496 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu3g3132 501 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 1 19 501 - -
Ssu3g3132 501 ProSitePatterns Sugar transport proteins signature 1. 109 126 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu3g3132 501 ProSitePatterns Sugar transport proteins signature 2. 151 176 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu3g3132 501 Gene3D MFS general substrate transporter like domains 39 499 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3132 Ssu-Chr3 87291026 87298703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3132 4 501 Organic Solute Cotransporters AT5G17010 73.896 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3132 - - gmx:100801856 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3132 3 87291026 87298703 Ssu3g3132 3 87291026 87298703 ECH