LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g3131	ATGGCGGAGAATCGGAAAGCGCCGAAGCTTCCCGTGGAAGGAAAGCGCAACATCCTCATCACCAGCGCCTTGCCTTACGTCAACAACGTCCCTCACCTCGGCAACATCATTGGATGCGTGTTGAGTGCTGATGTGTTTGCTCGCTACTGTCGGCTTCGGGGTTATAACACTATTTACATCTGCGGTACTGATGAGTATGGAACAGCCACAGAGACTAAAGCCATGGAAGAAAATTGCTCTCCCAAGGAGATTTGTGACAAATACTATGCTATTCATAAGGACGTCTACAATTGGTTCAATATAAGTTTTGATGAGTTTGGGCGGACGTCATCCCCTCAGCAAACTGAAGTTTGCcaagcaatttttaaaaaaatatatgaaaacaaGTGGCTCTCTGAGAACACAATGCAGCAGCTTTACTGCGATGCTTGTGAAAGGTTCTTAGCTGATAGGCTTGTGGAGGGTACCTGCCCTACTCCGGGGTGTGAGTATGATTCTGCCCGAGGAGACCAATGTGAGAAGTGTGGAAAGCTTCTAAATCCGACAGAATTGAAAAATCCCAGATGCAAGTTTTGTCAGAAAAGTCCTCGTATTCGTGATACAGATCACTTGTTTCTTGAACTCCCCCTATTAAAAGATAGATTGGAAAAATACATCAGTGAGATGTCCGTGGTCGGTGGATGGAGTCAGAATGCTATCCAAACAACAAATTCATGGCTTAGAGAAGGATTAAAGCCACGTTGTATTACGAGGGATCTAAAGTGGGGGGTTCCTGTTCCACACGAAAAATACAGTGACAAGGTTTTCTATGTCTGGTTTGATGCACCTATTGGATATGTCTCAATCACTTCATGCTACACACGTGACTGGGAGAAATGGTGGAAAAACCCAGAGAATGTGGAGTTGTATCAGTTTATGGGCAAGGACAATGTGCCATTCCACACTGTGATGTTTCCATCTACTCTACTTGGAACTGGTGAAAATTGGACTTTAATGAAGACTATCAGTGTTACCGAATACCTGAATTATGAAGCAGggaaGTTTTCTAAGAGCAAAGGCATCGGGGTATTTGGTAATGATGTGAAAGATACTAATATTCCAGTTGAAGTATGGAGATATTACTTGCTCACAAATAGGCCTGAGGTATCAGATACGTTATTTACATGGCCTGATTTGCAAGCTAAATTAAATAGTGAGTTACTGAATAATTTGGGCAACTTCATCAACCGAGTTTTGAGTTTTATTGCCAAACCTGCAGGTCAAGGATATGATTCCATTATTCCCTCTGTTTCTGATGATGTTTCCCATGATCCGACCAAAAAATTGGCTGATAAAGTTGCTGCATATATAGACCAATACATAGAAGCAATGGAGAAGGTTAAACTAAAGCAAGGATTGAAAACTGCAATGAGCATATCCAGTGAGGGAAATGCATATCTGCAGGAATCTGAATTCTGGCGCCTTTACAAGGAAAACAGATCTCTCTGCTCCCTTGTCATGAAAACTGCAGCTGGGATTGTATATCTTCTTGCTTGTTTATTGGAACCTTTTATCCCATCTTTCACTCTTGAAGTATTTAAGCAGCTAAATTTGCCTGTGGAGATACATGTTTCACTTTGTGATGATAAAGGAAATGTTGATAGGATAAAAAGACCCTGGGATATCATAAGTGCTGGTCATAAAATTGGAACACCCAAGCCATTGTTCAGGGAGCTGAAAGATGAAGAAGTGGAGTTCTACAGGAAGAGGTTTGCAGGAAGTCAAGCTGACAGGATTGTGCGTGCAGAGGCTGAAGCTGAAAATATTGCCGAGCAACTGAAGAAAACGAAAGTTTCAGATGGCACTGGAAAGAAAAAGTCATCAGCAAAATCATCAAatgaaaccaaaaacaaaactgCTGCTGAACCTGATATTACTATCACAAGGCTTGATGTCCGGGTTGGCCTCATAAAAAAAGCTCAAAAACATCCTGATGCAGATTCACTATATGTTGAAGAGATTGACGTTGGTGAAGAACAAACCAGAACTGTTGTCAGTGGGCTTGTCAAATATATACCACTTGATGAAATGCAGAACCGAAAGGTCTGTGTTCTTTGCAACCTAAAGCCAGCAACCATGAGGGGCATTAAATCCCAAGCAATGGTTCTTGCTGCTTCCAATGATGATCACACCAAGGTTGAGTTGGTTGAGCCACCCAGTTCTGCTCATGTTGGAGAAAGAATTACAGTCCCAGGGTATGAAGGTAATCCTGATGAACTCTTAAACCCAAAGAAGAAAGTTTGGGAGACATTGCAAGTCGATTTGCACACTAATGAGGAGCTAGTGGCATGCTACAAAAATGTTCCACTCACCACATCAGCTGGCATTTGCAAGGTTTCATCCATACGCTGTGGATCGATAAGGTAG	2406	0.4148	MAENRKAPKLPVEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNTIYICGTDEYGTATETKAMEENCSPKEICDKYYAIHKDVYNWFNISFDEFGRTSSPQQTEVCQAIFKKIYENKWLSENTMQQLYCDACERFLADRLVEGTCPTPGCEYDSARGDQCEKCGKLLNPTELKNPRCKFCQKSPRIRDTDHLFLELPLLKDRLEKYISEMSVVGGWSQNAIQTTNSWLREGLKPRCITRDLKWGVPVPHEKYSDKVFYVWFDAPIGYVSITSCYTRDWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDVKDTNIPVEVWRYYLLTNRPEVSDTLFTWPDLQAKLNSELLNNLGNFINRVLSFIAKPAGQGYDSIIPSVSDDVSHDPTKKLADKVAAYIDQYIEAMEKVKLKQGLKTAMSISSEGNAYLQESEFWRLYKENRSLCSLVMKTAAGIVYLLACLLEPFIPSFTLEVFKQLNLPVEIHVSLCDDKGNVDRIKRPWDIISAGHKIGTPKPLFRELKDEEVEFYRKRFAGSQADRIVRAEAEAENIAEQLKKTKVSDGTGKKKSSAKSSNETKNKTAAEPDITITRLDVRVGLIKKAQKHPDADSLYVEEIDVGEEQTRTVVSGLVKYIPLDEMQNRKVCVLCNLKPATMRGIKSQAMVLAASNDDHTKVELVEPPSSAHVGERITVPGYEGNPDELLNPKKKVWETLQVDLHTNEELVACYKNVPLTTSAGICKVSSIRCGSIR	801

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu3g3131	801	Coils	Coil	592	612	-	-
Ssu3g3131	801	MobiDBLite	consensus disorder prediction	607	633	-	-
Ssu3g3131	801	Pfam	Putative tRNA binding domain	645	739	IPR002547	GO:0000049
Ssu3g3131	801	Gene3D	-	153	189	IPR029038	-
Ssu3g3131	801	CDD	MetRS_core	17	387	IPR033911	GO:0004825\|GO:0006431
Ssu3g3131	801	MobiDBLite	consensus disorder prediction	607	625	-	-
Ssu3g3131	801	CDD	tRNA_bind_EMAP-II_like	638	742	-	-
Ssu3g3131	801	ProSitePatterns	Aminoacyl-transfer RNA synthetases class-I signature.	25	36	IPR001412	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Ssu3g3131	801	SUPERFAMILY	Methionyl-tRNA synthetase (MetRS), Zn-domain	153	189	IPR029038	-
Ssu3g3131	801	CDD	Anticodon_Ia_Met	396	529	IPR041872	-
Ssu3g3131	801	SUPERFAMILY	Nucleic acid-binding proteins	641	785	IPR012340	-
Ssu3g3131	801	SUPERFAMILY	Nucleotidylyl transferase	15	399	-	-
Ssu3g3131	801	TIGRFAM	metG: methionine--tRNA ligase	18	535	IPR014758	GO:0000166\|GO:0004825\|GO:0005524\|GO:0006431
Ssu3g3131	801	Gene3D	HUPs	17	400	IPR014729	-
Ssu3g3131	801	PRINTS	Methionyl-tRNA synthetase signature	304	319	IPR033911	GO:0004825\|GO:0006431
Ssu3g3131	801	PRINTS	Methionyl-tRNA synthetase signature	53	67	IPR033911	GO:0004825\|GO:0006431
Ssu3g3131	801	PRINTS	Methionyl-tRNA synthetase signature	399	410	IPR033911	GO:0004825\|GO:0006431
Ssu3g3131	801	PRINTS	Methionyl-tRNA synthetase signature	101	112	IPR033911	GO:0004825\|GO:0006431
Ssu3g3131	801	PRINTS	Methionyl-tRNA synthetase signature	269	280	IPR033911	GO:0004825\|GO:0006431
Ssu3g3131	801	PRINTS	Methionyl-tRNA synthetase signature	20	33	IPR033911	GO:0004825\|GO:0006431
Ssu3g3131	801	Hamap	Methionine--tRNA ligase [metG].	16	583	IPR023458	GO:0004825
Ssu3g3131	801	ProSiteProfiles	tRNA-binding domain profile.	639	742	IPR002547	GO:0000049
Ssu3g3131	801	Pfam	tRNA synthetases class I (M)	18	412	IPR015413	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Ssu3g3131	801	Pfam	Anticodon binding domain of methionyl tRNA ligase	439	588	IPR041872	-
Ssu3g3131	801	Gene3D	-	638	801	IPR012340	-
Ssu3g3131	801	PANTHER	METHIONINE--TRNA LIGASE	6	801	IPR023458	GO:0004825
Ssu3g3131	801	SUPERFAMILY	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	404	585	IPR009080	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Ssu3g3131	801	PANTHER	METHIONINE--TRNA LIGASE CYTOPLASMIC	6	801	-	-
Ssu3g3131	801	Gene3D	-	401	571	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g3131	Ssu-Chr3	87268196	87274562	Dispersed/Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g3131	K01874		-	gmx:100809861	1536.55