Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3128 ATGGCCGCTGAGAAGCTCAGAGATTTGAGCCAGCCAATTGACGTGTCCTTGCTCGACGCCACCGTTGCCGCCTTCTATGGCACCGGATCTAAGGAAGAGAGGAATGCCGCTGATCAGATTCTTCGCGACTTGCAAAATAATCCCGATATGTGGCTTCAAGTCATGCATATTTTGCAAAACACTCAAAATCTGAATACTAAGTTCTTTGCCCTACAGGTTCTAGAAGGTGTAATTAAGTATAGATGGAATGCATTACCTGTTGAGCAGCGAGATGGAATGAAAAATTTCATCTCTGATGTTATTGTACAGCTTTCTAGCAATGAGGCTTCATTTCGAGCGGAAAGGCTGTATGTCAACAAactcaatattatattagttCAGATTTTGAAGCATGAGTGGCCGGCAAGGTGGCGAAGCTTTATTCCTGACCTGGTCTCAGCAGCTAAAACTAGTGAAACAATTTGTGAGAATTGTATGGCTATATTGAAACTTTTGAGTGAAGaggtttttgatttttcaagGGGAGAGATGACTCAGCAGAAGATAAAAGAGCTTAAACAATCATTGAACAGTGAATTTCAACTCATACATGAGTTATGCTTATATGTGTTATCGGCGTCCCAAAGGACTGAACTCATACGTGCAACTCTATCTACATTGCATGCCTTCTTATCATGGATTCCCTTGGGTTATATATTTGAATCACCATTGCTTGAGACGCTCCTAAAATTTTTCCCAGTCCCAGCATATCGGAACCTAACATTGCAATGTTTAACTGAGGTGGCAGCCCTTCAATTTGGGAATTATTATGATGTGCAGTATGTCAAGATGTATAACATATTCATGGTCCAGTTGCAGAGCATACTTCCTCCAACTACGAATATACCTGAGGCATATGCACAGGGTTCAAGTGAGGAACAAGCATTCATACAGAATCTTGCACTGTTCTTCACTTCATTTTACAagGTTCACATTCGCATCCTGGAATCCACTCAAGAGAATATAGCTGCTTTGCTAGTGGGCCTTGAATATCTTATCAACATTTCATATGTAGATGATACTGAGGTTTTTAAGGTCTGTTTGGACTACTGGAATTCGTTGGTATCGGAGTTGTTTGAACCACACCGAAGTCTGGACAATCCTGCAGCTGCTGCAACCATGATGGGACTTCAGGTACCAGCAATGCTCCCTGGTATGGTTGATGGGCATGGTTCTCAGCTTCTTCAGCGCCGGCAGCTTTATGCTGGTCCCATGTCAAAGTTGAGAATGCTTATGATCTGTCGCATGgctaagcctgaagaggttctCATAGTTGAAGATGAAAATGGGAACATTGTCCGCgaaaccttgaaggacaatgATGTTCTTGTTCAATATAAGATTATGAGGGAGACTCTTATTTACTTGTCACATCTTGACCATGATGATACTGAAAAGCAGATGCTGAGGAAATTAAGTAAACAGCTGAGTGGGGAGGATTGGACATGGAACAATTTGAATACACTATGCTGGGCGATAGGTTCTATATCGGGTTCCATGATGGAAGAACAGgaAAACAGATTTTTGGTTATGGTCATTCGTGATTTATTAAACCTATGTGAAATCACAAAGGGAAAAGATAACAAAGCTGTTATTGCCAGTAATATCATGTATGTTGTTGGGCAGTATCCACGGTTTTTAAGAGCTCATTGGAAGTTCCTTAAAACTGTTGTGAATAAGTTGTTTGAGTTTATGCATGAGACGCATCCTGGAGTTCAGGATATGGCCTGTGACACATTTCTGAAAATCGTCCAGAAGTGCAAGCGAAAATTTGTGATCACCCAGGTCGGGGAAAATGAGCCTTTTGTGTCTGAGCTTCTCACAGGCCTTCCCATCACCATTGCGGATCTTGAACCCCATCAGATACATTCCTTCTATGAATCTGTTGGTCACATGATTCAGGCGGAGTCTGATGTGCAGAAGAGAGATGAATATCTTCAGCGGTTGATGGAGCTCCCAAATCAGAAATGGATGGAGATTATAGGGCAGGCACAtcaaaatgttgattttttaaaGGATCAGGATGTAATCCGGACAGTGCTTAATATATTGCAGACGAATACAAGTGTTGCATCTTCTTTAGGGACATACTTCTTGCCCCAAATCTCATTGATCTTTTTGGACATGTTGAATGTGTACAGAATGTACAGTGAGCtaatttcaaaaagtatttCTGAAGGAGGACCTTTTGCATCTAGAACATCCTACGTGAAACTTCTACGTTCGGTTAAGAGGGAGACACTTAAGCTAATTGAGACATTCTTGGATAAGGCAGAAGACCAACCGCAAATTGGAAAACAATTTGTGCCACCAATGATGGATCCTGTTCTTGGAGATTACGCCAGGAATGTTCCTGATGCAAGGGAATCGGAGGTTTTGTCACTTTTTGCCACAATTGTGAACAAATATAAAGCTGCAATGATTGAAGATGTACCTCGCATATTTGAAGCTGTTTTTCAGTGCACACTCGAGatgattacaaaaaattttgaagattaCCCAGAGCATCGGCTCAAGTTCTTCTCTCTGCTCCGTGCAATTGCTACTCATTGTTTTCCTGCATTAATCTGCTTGTCAAGTCAGCAATTGAAGCTTGTTATGGACTCAATCATATGGGCATTTCGGCATACAGAAAGGAATATTGCTGAAACTGGGCTGAACCTGTTGTTGGAGATGCTGAAGAAGTTTCAGGGCTCAGAGTTCTGTAATCAGTTTTATCGGACATACTTTTTGACGATTGAACAAGAGATATTCGCTGTCTTGACTGATACTTTTCATAAGCCTGGGTTCAAATTACATGTCTTGGTGCTTCAGCATTTGTTCTGTTTGCTGGAAACTGGTGTCCTAACTGAACCTCTTTGGGATGTTGCTACAAGTCCATATTCATACTCTAGTAATGCTGTGTTTGTACGTGAGTTTACCATAAAACTTCTAAGCACTTCATTTCCCAACATGACAGCAGCAGAGGTTACCCAATTTGTTAATGGACTATTTGAGTCCACCAATGATCTCTCCACATTTAAAAATCACATACGAGATTTTCTTATTCAGTCAAAAGAATTTTCAGCTCAGGATAACAAAGATCTATATGCTGAAGAGGCTGCAgctcagagagagagagaacggCAAAGAATGCTTTCTATTCCAGGGCTTATTGCCCCAAGCGAGTTGCAAGACGAAATGGTGGACTCATAG 3234 0.3961 MAAEKLRDLSQPIDVSLLDATVAAFYGTGSKEERNAADQILRDLQNNPDMWLQVMHILQNTQNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNFISDVIVQLSSNEASFRAERLYVNKLNIILVQILKHEWPARWRSFIPDLVSAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTELIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPVPAYRNLTLQCLTEVAALQFGNYYDVQYVKMYNIFMVQLQSILPPTTNIPEAYAQGSSEEQAFIQNLALFFTSFYKVHIRILESTQENIAALLVGLEYLINISYVDDTEVFKVCLDYWNSLVSELFEPHRSLDNPAAAATMMGLQVPAMLPGMVDGHGSQLLQRRQLYAGPMSKLRMLMICRMAKPEEVLIVEDENGNIVRETLKDNDVLVQYKIMRETLIYLSHLDHDDTEKQMLRKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVITQVGENEPFVSELLTGLPITIADLEPHQIHSFYESVGHMIQAESDVQKRDEYLQRLMELPNQKWMEIIGQAHQNVDFLKDQDVIRTVLNILQTNTSVASSLGTYFLPQISLIFLDMLNVYRMYSELISKSISEGGPFASRTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQFVPPMMDPVLGDYARNVPDARESEVLSLFATIVNKYKAAMIEDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALICLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKKFQGSEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLLETGVLTEPLWDVATSPYSYSSNAVFVREFTIKLLSTSFPNMTAAEVTQFVNGLFESTNDLSTFKNHIRDFLIQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPSELQDEMVDS 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3128 1077 Pfam Chromosome region maintenance or exportin repeat 337 372 IPR041123 -
Ssu3g3128 1077 Pfam CRM1 C terminal 714 1035 IPR014877 GO:0005049
Ssu3g3128 1077 ProSiteProfiles Importin-beta N-terminal domain profile. 37 103 IPR001494 GO:0006886|GO:0031267
Ssu3g3128 1077 Pfam Exportin 1-like protein 115 258 IPR013598 -
Ssu3g3128 1077 Pfam CRM1 / Exportin repeat 2 410 477 IPR041235 -
Ssu3g3128 1077 Gene3D - 1 1060 IPR011989 -
Ssu3g3128 1077 PANTHER EXPORTIN 1/5 4 1077 IPR045065 GO:0005049|GO:0006611
Ssu3g3128 1077 SMART CRM1_C_2 714 1036 IPR014877 GO:0005049
Ssu3g3128 1077 SUPERFAMILY ARM repeat 21 1026 IPR016024 -
Ssu3g3128 1077 PANTHER EXPORTIN 1A-RELATED 4 1077 - -
Ssu3g3128 1077 SMART IBN_N_2 37 103 IPR001494 GO:0006886|GO:0031267
Ssu3g3128 1077 Pfam Importin-beta N-terminal domain 37 103 IPR001494 GO:0006886|GO:0031267
Ssu3g3128 1077 Pfam CRM1 / Exportin repeat 3 491 540 IPR040485 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3128 Ssu-Chr3 87208227 87220836 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3128 K14290 - gmx:100813443 2098.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3128 3 87208227 87220836 Ssu3g3128 3 87208227 87220836 ECH