Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3127 ATGGGTCAAGCTTTCCGGAAGCTCTTCGATACCTTCTTCGGCAATACCGAGATGCGGGTTGTGATGCTTGGTCTTGATGCTGCTGGCAAAACAACTATACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATTGGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACAGTTTGGGATGTCGGAGGGCAAGAGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAACACTGATGGTTTGATATATGTTGTTGATAGTCTGGACCGTGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAgACAATCATAAATGATCCATTTATGCTCCACAGTGTCATCTTGGTGTTTGCCAACAAACAGGACTCGaGAGGAGCAATGTCACCAAGGGAAGTATGTGAAGGATTAGGTCTCTTTGATCTCAAGAATAGAAAGTGGCACATACAAGGCACTTGTGCTCTTCGGGGAGATGGCCTTTATGAGGGCTTGGACTGGTTGTCCACAACCCTGAAGGAGAGAAAAGCTGCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAA 588 0.432 MGQAFRKLFDTFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLRALWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQTIINDPFMLHSVILVFANKQDSRGAMSPREVCEGLGLFDLKNRKWHIQGTCALRGDGLYEGLDWLSTTLKERKAAGYSSIGLGTSSF 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3127 195 PANTHER ADP-RIBOSYLATION FACTOR B1B 1 195 - -
Ssu3g3127 195 Gene3D - 3 187 IPR027417 -
Ssu3g3127 195 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Ssu3g3127 195 SMART arf_sub_2 1 181 - -
Ssu3g3127 195 PANTHER ADP-RIBOSYLATION FACTOR B1C 1 189 - -
Ssu3g3127 195 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Ssu3g3127 195 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 195 IPR024156 GO:0005525
Ssu3g3127 195 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 189 IPR024156 GO:0005525
Ssu3g3127 195 TIGRFAM small_GTP: small GTP-binding protein domain 16 138 IPR005225 GO:0005525
Ssu3g3127 195 SMART sar_sub_1 9 177 IPR006689 GO:0003924|GO:0005525
Ssu3g3127 195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 181 IPR027417 -
Ssu3g3127 195 Pfam ADP-ribosylation factor family 6 176 IPR006689 GO:0003924|GO:0005525
Ssu3g3127 195 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Ssu3g3127 195 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Ssu3g3127 195 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Ssu3g3127 195 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3127 Ssu-Chr3 87201347 87204764 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3127 K07937 - gmx:100499903 392.889