Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3122 ATGCAATCGCTCAATCGTCTTCCCCTCACCCTCAAACCTTTCTCTTCCGGCTCCAATCCCTCAATGGCCTCAAGTAAGTTTCTAGTTGACACTAACAATTTGACCTTGACAGATTGGTGTGGAAAAGGTTTTGCTTCCGGCCTTGTAAATCTTGGTGAAATAGAAGTTTCCAGGGTCTCTAGGTTTGAGTTTATTTGGAGCAGCAGTGCTATGCTAGACACAAAAAAGGCTGTTACATTCTATAGGCCTGTGGGAGTACCTGATAGGTTCCATATCCTTGGTCACCATTGTCAACCCAGTGACAAGCCTTTAAGGAGTTTTGTACTTGTTGCTAGAGAAGTGGAAACTTGCTTGCCTGAAACTGCTGATATTTACAATCAAGATAAGTCACCTCCTCTGAAGAACCCCCTTGATTTTAAGTTAGTTTGGAATCAAAATGCAGGAAGTATGGAAATGTCAGGGGTATACTTTTGGCTACCTGCACCTCCTGAAGGTTATAAGGCCCTTGGTTACTTGGTTACAAACAAACCTGACAAGCCTTTGTTGGATGAAATGTGCTGTGTTCGTACTGATCTCACTGATAAATGTCAAACTTACCGCCTAATACTCACTGCTGGTTCTGGAAAGCCTGAGTTTTCGTTTCAGGTATGGAGCTTGAGACCTTGTGAACGTGGCATGCTAGGGAAAGGAGTTTCTGTTGGGACTTTTTTCTGCAGTAGTGGCTGGAACATGAGAGAGGATCTGCCTGTTGCATGCTTGAAGAACCTAAATCATATGCTACCAGCAATGCCAAATTTGCAACAAATACATGCACTTATTAAGCATTACGGCCCTACTGTTTTCTTTCATCCTGAGGAAATTTACTTGCCATCTTCTGTGGCTTGGTTTTTCACCAATGGAGCCTTGTTGTACACAAAGGGTGGGTCTAAAGGAGAGGGAATTGATGCAACTGGCTCAAATCTACCAGTTGGAGGAACAAATGATGGGCAGTTTTGGATAGACTTGCCAATTGATGATAAGAGGGATTTTCTCAAACGAGGGGACTTGAACAGTGCAAGGCTTTATGTTCATGTGAAGCCAGCTATTGGTGGAACTTTTACTGACATTGCAATGTGGGTGTTTTGCCCTTTCAATGGGCCAGCCACTCTGAAAATTGGAATTAAGAATATTCCTTTGAGCAAGATTGGAGAGCATGTTGGTGACTGGGAGCATTTTACACTCCGTATATGCAACTTCAGTGGAGAGCTCTATAGCATATACTTCTCTCAGCACAGTGGTGGTGAATGTGTGGATGCCTATGACTTGGATTATATTGAAGGCAATAAAGCTATTGTTTACTCATCAAAATGTGGACATGCAAGTTACCCTCATCCTGGGACCTATATCCAAGGTTCTTCAAAACTTGGGATTGGCATTAGGAATGATGCAGCTCGCAGTAATTTGTACGTGGATTCTAGTATTCACTATGAGCTTGTTGCAGCTGAGTATCTTGAAAATGATGTCACTGAGCCTCAATGGTTGCAGTTTATGAGACAGTGGGGCCCCAAAATTGTTTATGATACCAAAACTGAGCTGGATAAGGTAATCAATGCTCTACCTCGCATGCTTCGATATTCAGTGAAGAACTTATTTAACAAGTTTCCAGTGGAACTTTACGGTGAGGAAGGTCCCACTGGGccgaaagagaaaaataattggaTACAGGATGAAAGATGGTGA 1719 0.4223 MQSLNRLPLTLKPFSSGSNPSMASSKFLVDTNNLTLTDWCGKGFASGLVNLGEIEVSRVSRFEFIWSSSAMLDTKKAVTFYRPVGVPDRFHILGHHCQPSDKPLRSFVLVAREVETCLPETADIYNQDKSPPLKNPLDFKLVWNQNAGSMEMSGVYFWLPAPPEGYKALGYLVTNKPDKPLLDEMCCVRTDLTDKCQTYRLILTAGSGKPEFSFQVWSLRPCERGMLGKGVSVGTFFCSSGWNMREDLPVACLKNLNHMLPAMPNLQQIHALIKHYGPTVFFHPEEIYLPSSVAWFFTNGALLYTKGGSKGEGIDATGSNLPVGGTNDGQFWIDLPIDDKRDFLKRGDLNSARLYVHVKPAIGGTFTDIAMWVFCPFNGPATLKIGIKNIPLSKIGEHVGDWEHFTLRICNFSGELYSIYFSQHSGGECVDAYDLDYIEGNKAIVYSSKCGHASYPHPGTYIQGSSKLGIGIRNDAARSNLYVDSSIHYELVAAEYLENDVTEPQWLQFMRQWGPKIVYDTKTELDKVINALPRMLRYSVKNLFNKFPVELYGEEGPTGPKEKNNWIQDERW 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3122 572 Pfam Vacuolar protein sorting-associated protein 62 38 570 IPR009291 -
Ssu3g3122 572 PANTHER - 36 572 - -
Ssu3g3122 572 PANTHER PROCESSING PROTEIN PRP39, PUTATIVE-RELATED 36 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3122 Ssu-Chr3 87139788 87141966 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3122 - - gmx:100793026 947.962