Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3121 ATGCTATCGTTTCAGCTGAAGCAGGTATTGTCAGAATACCCTGAGGCAAAAATGACAAGTGAGCAGCAGTACGCGTCATTAGGAGAATCCTACAGCGAGTTGGTTAACAAATTGGATGAAGCGCTTACTTGTTTCATTGAAGGCCCTCCATTTACATTGCAAAGGCTTTGTGAGATCCTATTGGCTTCAAAGAGCATTTATCCAAATCTTTCAAAGCTTGCTTTAGCTCTTGAAAAGAACTTATTAGTTACATCTACATTAACAATCTGCACTGATCCATACCCACAAGCTACAGCAAAAGAGCCAGATGACCTAGAGAAGGCAAGTGAAAAGCAGAAGCAGCAATCCAATAGTGCACAAAATGGCATTGAGCCTCTGGTGTCTGACAAAGATGAAGTAATGACTGAGGCTGATGTGGGTGAAGATATGACCATTGACATGGAAGCTTTTGAAGGCGTTAAATCATCAGAAACAAATTCTGAGCCTAATGCTATAATGCATGAGCTTCATGGTTACTGTGCATCTTTAAATCCATAA 537 0.406 MLSFQLKQVLSEYPEAKMTSEQQYASLGESYSELVNKLDEALTCFIEGPPFTLQRLCEILLASKSIYPNLSKLALALEKNLLVTSTLTICTDPYPQATAKEPDDLEKASEKQKQQSNSAQNGIEPLVSDKDEVMTEADVGEDMTIDMEAFEGVKSSETNSEPNAIMHELHGYCASLNP 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3121 178 Pfam PPP4R2 31 160 IPR015267 GO:0019888|GO:0030289
Ssu3g3121 178 PANTHER PPP4R2-RELATED PROTEIN 1 163 IPR015267 GO:0019888|GO:0030289
Ssu3g3121 178 MobiDBLite consensus disorder prediction 104 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3121 Ssu-Chr3 87132320 87134957 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3121 K15425 - gmx:100803269 293.508