Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3112 ATGACGACGTCGTTTGGAGCAGCCACCACCTCAGCGGCGCTCAAGGACCCCAAGGCTCAGATCCCGAGCTTCCATGGCTTGAGGTCTGCATCCGCCTCCGCATCCGCTCTCACTCGCAATGCCCTCTCGCTTCCTTCATCCACTCGCTCTCTCTCCATCATACGAGCTGTTTCCACGCCTGCGAAGTCGGAAGCTGCCACTGAGAAGCGCAGCAAAGTCGAAATATTCAAAGAACAAAGCAATTTCATAAGATATCCTCTCAATGAGGACTTGTTGACAGATGCCCCTAATATAGGTGAAGCTGCCACTCAGTTGATCAAGTTTCATGGTAGCTACCAACAGTACAATAGAGAAGAGCGTGGTTCCAGGAGCTACTCTTTTATGATACGGACTAAGAACCCTTGTGGCAAAGTTTCAAACCAACTTTACTTGACCATGGATGATCTTGCTGACCAGTTTGGGATTGGGACGCTTCGGTTGACCACCAGACAGACGTTTCAGCTCCACGGTGTTCTCAAGAAGGACCTTAAAACGGTGATGAGTACCATTATTAGAAACATGGGCTCAACTCTCGGTGCGTGTGGTGACCTAAACAGAAATGTGCTTGCTCCTGCTGCTCCCCTTCTGAGGAAAGATTACCTCTTGGCTCAACAAACTGCAGAGAACATTGCCGCGCTCCTTGCTCCTCAGTCTGGTTTCTACTATGATATTTGGGTAGATGGGGAAAAGATTTTGTCATCAGAACCACCTGAAGTAGTTTGCGCACGAAATGACAATTCTCATGGTACAAACTTCCCAGATTCACCCGAGCCCATCTATGGAACTCAGTTCTTGCCAAGGAAATTCAAAATTGCTGTTACTGTGCCAACTGATAACTCGGTGGATATTCTCACAAATGATattggtgttgttgttgttaccaaCGATGATGGGGAGCCTCAAGGGTTCAACATATATGTTGGTGGTGGAATGGGAAGAACTCACAGGTTGGAAAGCACTTTTCCTCGCTTGGCTGAGCCGTTAGGTTATGTACCAAAGGAGGATATTTTGTATGCAGTGAAAGCAATTGTTGTTACACAACGAGAAAATGGGAGAAGAGATGATCGCAAGTATAGtagaatgaaatatttgatcAGCTCTTGGGGAATTGAAAAGTTTAGAAGTGTAGTTGAGCAATATTATGGCAAGAAATTTGAACCTTTCCGTGAATTGCCAGAATGGGAATTTAAAGGTTATCTTGGGTGGCATGAGCAGGGTGATGGCAAATTATTTTATGGGCTTCATGTTGATAATGGCCGTATTGGTGGAAACATGAAAAAGACATTGAGGGAGGTTATTGAGAAGTATAATTTGAATGTAAGAATCACTCCAAATCAGAATATCATCTTGACTGACATTCATGCTGCATGGAAGCGTCCCATTACAACCACTCTTGCTCAGGCTGGTTTGCTGCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCTTTCCCATTATGTCCACTGGCAATTACTGAAGCTGAACGTGGGATACCTAACATTCTTAAGCGGATTCGTGCTGTTTTTGATAAGGTTGGTCTGAAGTATAATGAGTCCGTGGTTGTAAGGATAACTGGCTGCCCTAATGGTTGTGCTAGACCATACATGGCTGAACTTGGACTAGTTGGTGATGGCCCAAATAGCTATCAGATTTGGTTAGGAGGAAACAAGAAACAAACATCATTAGCTCGAAGTTTCATGGACAAGGTGAAGCTTCTAGACCTTGAAAAAGTTTTGGagcctttgttttattattggaagcaaaggcGTCAATCTAAAGAATCATTTGGTGACTTCACGAACCGAATGGGATTTGAGAAGCTTAAAGAATTTGTTGAGAAATGGGAGGGTCCGGTGGTAGCACCAGCACGCCACAACCTCAAGCTTTTTGCTGACAAGGAGACATACGAAGCAATGGATGAATTAGCAAAGCTTCAAAACAAGAATGCTCATCAGTTGGCCATGGAAGTTATCCGCAATTATGTTGCTTCCAACCAAAATGGAAAAGGTGAATGA 2070 0.4319 MTTSFGAATTSAALKDPKAQIPSFHGLRSASASASALTRNALSLPSSTRSLSIIRAVSTPAKSEAATEKRSKVEIFKEQSNFIRYPLNEDLLTDAPNIGEAATQLIKFHGSYQQYNREERGSRSYSFMIRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMSTIIRNMGSTLGACGDLNRNVLAPAAPLLRKDYLLAQQTAENIAALLAPQSGFYYDIWVDGEKILSSEPPEVVCARNDNSHGTNFPDSPEPIYGTQFLPRKFKIAVTVPTDNSVDILTNDIGVVVVTNDDGEPQGFNIYVGGGMGRTHRLESTFPRLAEPLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRELPEWEFKGYLGWHEQGDGKLFYGLHVDNGRIGGNMKKTLREVIEKYNLNVRITPNQNIILTDIHAAWKRPITTTLAQAGLLQPRFVDPLNITAMACPAFPLCPLAITEAERGIPNILKRIRAVFDKVGLKYNESVVVRITGCPNGCARPYMAELGLVGDGPNSYQIWLGGNKKQTSLARSFMDKVKLLDLEKVLEPLFYYWKQRRQSKESFGDFTNRMGFEKLKEFVEKWEGPVVAPARHNLKLFADKETYEAMDELAKLQNKNAHQLAMEVIRNYVASNQNGKGE 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3112 689 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 543 559 IPR006066 GO:0016491|GO:0020037|GO:0051536
Ssu3g3112 689 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 195 410 IPR045854 -
Ssu3g3112 689 PANTHER SULFITE REDUCTASE [NADPH] SUBUNIT BETA-RELATED 1 635 IPR045169 GO:0016491|GO:0020037|GO:0051536
Ssu3g3112 689 Gene3D Sulfite Reductase Hemoprotein;Domain 2 403 486 - -
Ssu3g3112 689 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 492 643 IPR045854 -
Ssu3g3112 689 Gene3D Sulfite Reductase Hemoprotein, domain 1 194 402 IPR045854 -
Ssu3g3112 689 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 68 194 IPR036136 GO:0016491
Ssu3g3112 689 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 416 470 IPR005117 GO:0016491
Ssu3g3112 689 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 126 182 IPR005117 GO:0016491
Ssu3g3112 689 Pfam Nitrite and sulphite reductase 4Fe-4S domain 493 632 IPR006067 GO:0016491|GO:0020037|GO:0051536
Ssu3g3112 689 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 413 485 IPR036136 GO:0016491
Ssu3g3112 689 Gene3D Sulfite Reductase Hemoprotein, domain 1 490 637 IPR045854 -
Ssu3g3112 689 Pfam Nitrite and sulphite reductase 4Fe-4S domain 220 398 IPR006067 GO:0016491|GO:0020037|GO:0051536
Ssu3g3112 689 PANTHER BNAA01G31570D PROTEIN 1 635 - -
Ssu3g3112 689 PRINTS Sirohaem Fe-binding site signature 494 512 IPR006066 GO:0016491|GO:0020037|GO:0051536
Ssu3g3112 689 PRINTS Sirohaem Fe-binding site signature 543 561 IPR006066 GO:0016491|GO:0020037|GO:0051536
Ssu3g3112 689 TIGRFAM sir: sulfite reductase, ferredoxin dependent 61 633 IPR011787 GO:0020037|GO:0050311|GO:0051539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3112 K00392 - gmx:547693 1295.8