Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3109 ATGAGCAGCGGGGTAGGAAAGGTGGTGTGTGTGACGGGTGCTTCTGGTTTCATTGCTTCATGGATAGTCAAATTCCTTCTCCAACGTGGTTACACTGTTAGGGCCACCGTTCGCGACCCGAGTAATCCCAAAAAGGTTGAGCACTTGCTTAAACTTGAGGGCGCAAAAGAGAGGCTGCACCTGTTTAAGGCGGATCTGTTGGAAGAAGGTTCATTCGACTCCGTTGTGGAAGGCTGTGACGGCGTTTTTCACACTGCTTCACCTGTCCGTTTCGTTGTCAACGACCCACAGGCTGAATTGATTGATCCAGCATTGAAAGGAACTCTTAATGTTCTCAAATCATGTGCAAAATCACCATCTGTGAAACGGGTTGTCTTAACTTCTTCTATTTCTGCAGTTGCATTTAATGGAAGACCTAAAACTCCTGAAGTAGTAGTTGATGAGACATGGTTTTCAGATCCAGATTTCTGTAGGGAATTAGAGTTGTGGTACACACTTTCAAAGGCTTTGGCTGAGGAAGCTGCCTGGAAATTTGTAAATGACAACAACATTGACATGATTACTATTAACCCGACAATGGTGGCAGGACCTCTCTTACAACCAGAGGTTAATGAAAGCGTTGAGCCAATTTTAAACctaataaatgGTAAACAATTTCCAAATAAATCTTTTGGATGGGTCGATGTGAAAGATGTTGCTAACGCTCATATTCTGGCATATGAGATAGCTTCAGCTAGTGGAAGATACTGTTTGGTTGAGAGAGTCATACACTACTCTGAACTTGCTAGGATTTTACGTGATCTATACCCCACATTACAAATTCCAGATAAGTGTGAGGTTGACGAGCCGTATGTGCCAACATACCAGATTTCCACAGAAAAGGCAAAAAAGAGCTTGGGAATAGAGTTTACTCCTTTGGAAGTGAGTCTCAGGGAGACTGTGGAAAGCTTCAGAGAAAAGAAGATTGTCAACTTTTAA 978 0.4254 MSSGVGKVVCVTGASGFIASWIVKFLLQRGYTVRATVRDPSNPKKVEHLLKLEGAKERLHLFKADLLEEGSFDSVVEGCDGVFHTASPVRFVVNDPQAELIDPALKGTLNVLKSCAKSPSVKRVVLTSSISAVAFNGRPKTPEVVVDETWFSDPDFCRELELWYTLSKALAEEAAWKFVNDNNIDMITINPTMVAGPLLQPEVNESVEPILNLINGKQFPNKSFGWVDVKDVANAHILAYEIASASGRYCLVERVIHYSELARILRDLYPTLQIPDKCEVDEPYVPTYQISTEKAKKSLGIEFTPLEVSLRETVESFREKKIVNF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3109 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 319 IPR036291 -
Ssu3g3109 325 Pfam NAD dependent epimerase/dehydratase family 9 241 IPR001509 -
Ssu3g3109 325 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 3 323 - -
Ssu3g3109 325 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 3 323 - -
Ssu3g3109 325 Gene3D - 7 325 - -
Ssu3g3109 325 CDD FR_SDR_e 9 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3109 Ssu-Chr3 86969360 86995656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3109 2 325 Miscellaneous Gene Families AT5G19440 67.692 1.94e-170 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3109 - - gmx:100799213 600.897