Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3107 ATGTTCTTAAATCATGTGCAAAATCGCCGTGAACGAGTTGTCTTAACGTCTTCTATTGCTGCTATTGCATATAATGAAAGGCCAAAAACTCCCGAAGTTGTAGTTGATGAAACATGGTTTTCAGACCCAGATTACTGTAGGGACTTGAAGAAATGGTATGTACTTTCAAAGACTTTGGCTGAGGAGGCTGCCTGGAAATTCGCAAAAGAAAACAGCCTTGACTTGGTTTCTCTTAACCCAGCAATGGTTGTAGGGCCGGTTTTGCAAGCAGAGATTAACACTAGTTCTGCTGCAGTTTTAAACctaataaatgGTTCAGAAACTTTTCCAAATAAATGCTATGGATGGATCAATGTGAAGGATTTTGCAAACACCCATATTCGGGCATATGAGATTGCTTCAGCTAGTGGAAGATATTGTTTAGTTGAGAGTGTGGCACACTACTCTGAAGTCGTCATGATTTTACGTGATCTGTACCGGATGTGTACAGACGAAAAGCCTTATGAGCCAACATTTCAGGAAGGTAAAGAGCTTAGGGATTGA 543 0.4015 MFLNHVQNRRERVVLTSSIAAIAYNERPKTPEVVVDETWFSDPDYCRDLKKWYVLSKTLAEEAAWKFAKENSLDLVSLNPAMVVGPVLQAEINTSSAAVLNLINGSETFPNKCYGWINVKDFANTHIRAYEIASASGRYCLVESVAHYSEVVMILRDLYRMCTDEKPYEPTFQEGKELRD 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3107 180 Gene3D - 3 179 - -
Ssu3g3107 180 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 11 161 - -
Ssu3g3107 180 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 160 IPR036291 -
Ssu3g3107 180 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 11 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3107 Ssu-Chr3 86940613 86942063 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3107 11 177 Miscellaneous Gene Families AT5G19440 63.006 3.19e-81 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3107 - - gmx:100809326 267.314