Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3105 ATGAGCAGCAACGCAGGAAAAGCGGTGTGTGTGACTGGTGCTTCTGGTTATGTAGCTTCATGGATCGTCAAATTCCTTCTCCAACGTGGTTACACTGTCAGGGCCACTGTTCGCGACCCAACTAATCCAGAAAAGGTTGATCACTTGCTTAAACTTGATGGAGCAAAGGAGAGGTTACACCTCTTCAAGGCAGATCTCCTGGAGGAAGGCTCCTTTGACTCTGCTGTTGATGGCTGTGACGGTGTCTTTCATACTGCTTCACCCGTTCAGTTCATTGTCAATGATCCACAGGCTCAGTTAATTGAACCAGCGGTGAAAGGAACTCTTAACGTTGTTAAATCATGTGCAAAATCGCCATGTGTGAAACGAGTTGTTTTAACGTCTTCTATTGCTGCCGTTTTATATAATGGGAAGCCTCGGACTCCCGAGGTTGTAGTTGATGAGACTTGGTTTTCAGATCCAAATATCGTAAGGGAACTTGAGaGGTGGTATGCATTTTCAAAGACTTCGGCCGAGGATGCTGCCAGGAAATTCTTAAACGAATACGACATTAAGTTGGTTGTTATTAACCCAGGAATGTCTATAGGGCCTCTCTTGCAACCAGAGCTTAACGGAAGTTCTTCTACAATTTTAAACCTAATCAATGGTTCGCAAACGTTTCCAAATAATAGTTTTGGGTGGATCAATGTGAAAGATGTTGCAAATGCGCATATTCAAGCATATGAGATTGCTTCAGCTAGTGGAAGATATTGTCTGGTTGAAAGAGTGGCACACTTTTCCGAACTTGCAAAGATTTTACGTGATATATACCCAACTTTACAGGTTCCAGAGAAGTGTGAAGACGATGAACCTTTTATGCCAACATTTAAGGTTTCCAAAGAAAAGGCAAAGAGCTTGGGAATTGAATTTATACCCTTGGAAGTGAGCCTCAGAGAGACAGTGgaaagtttaaaagaaaagaagtttgtCGACTTCTAG 978 0.4182 MSSNAGKAVCVTGASGYVASWIVKFLLQRGYTVRATVRDPTNPEKVDHLLKLDGAKERLHLFKADLLEEGSFDSAVDGCDGVFHTASPVQFIVNDPQAQLIEPAVKGTLNVVKSCAKSPCVKRVVLTSSIAAVLYNGKPRTPEVVVDETWFSDPNIVRELERWYAFSKTSAEDAARKFLNEYDIKLVVINPGMSIGPLLQPELNGSSSTILNLINGSQTFPNNSFGWINVKDVANAHIQAYEIASASGRYCLVERVAHFSELAKILRDIYPTLQVPEKCEDDEPFMPTFKVSKEKAKSLGIEFIPLEVSLRETVESLKEKKFVDF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3105 325 Gene3D - 8 325 - -
Ssu3g3105 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 318 IPR036291 -
Ssu3g3105 325 Pfam NAD dependent epimerase/dehydratase family 9 242 IPR001509 -
Ssu3g3105 325 CDD FR_SDR_e 9 300 - -
Ssu3g3105 325 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 2 323 - -
Ssu3g3105 325 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3105 Ssu-Chr3 86924605 86929861 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3105 2 325 Miscellaneous Gene Families AT5G19440 68.210 3.55e-171 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3105 - - gmx:100804704 582.793