Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3104 ATGGCTTCTGTTCTGCCTCTATACCACACCCTCCCATCTCTTTCCCAAGCTCTCCATTCAAGACCACACACCACCTTCAACACATCCACAACACTCTTCTTTCACAAAAACAAGCCTTCACCAATCCTCAACAACACAAACACACGTTACACACCCCTCAGGTGCTCTTCCACTACCTCAAACCTAATCCCCGAGGCGGACCAAGAATATTTTGAAGGAGCAGAAACATTAGAACCTCCCTTGAGCCAAGTGTGGAAGGAAATCCAAGGCATCAACGACTGGGAGGGCATCATAGACCCAACCATGAACCCCCATCTCCGCAAAGAAATAATTCGCTACGGCGAACTCGCTCAGGCCTCCTACGACTCCTTCGACTTCGACCCTCACTCCAAGTACTGCGGCACGTGCAAGTACCACCCCTCACACTTCTTCGACAAGCTCAATATGTCCGGTACGGGCTACACCATCAGCCGCTACCTCTACGCAACCTCCAACGTCAACCTCCCCAACTTCTTCCAGAAATCCAACCTAGCCAGCGTGTGGAGCCCGCATGCCAACTGGATGGGCTACGTGGCAGTCGCCACCGACAAGGACCAGGTCAAACGCCTCGGACGCCGCGACATCGTCATTGCATGGAGAGGCACCGTCACCTACGTCGAGTGGATTCACGACCTCAAAGACATTCTCCGCCCCGCACTCTTCTCTAGCGACCCCACCATCAAAGTCGAATCCGGCTTCTACGACTTGTACACAAAGAAAGAAGACTCGTGCAGCTATTGCTCTTTCTCCGCTCGCGAACAAGTACTTTCAGAAGTGAAACGGCTCCTTCAGTATTACCAAGAAGAAGAGATCAGCATCACTGTAACAGGACACAGTCTCGGTGCTGCCTTGGCGATTTTGAGTGCGTACGACATAGCTGAGCTCAAGTTAAACGTTGTTGAAGAGGGTGCTAAGATTCCTGTGACGGTGTTCTCCTTTGCGGGGCCGAGAGTTGGGAACTTGAAGTTTAAGGAGCGGTGTGAGGGGCTTGGGGTGAAGGTGTTGAGGGTGGTGAACGTGCACGATGTGGTGCCGACCGTGCCTGGGATAATAACCAACGAGAAGTTTCAGTTTCAGAGGTACATAGAGGACGCGTTGAGTTTTCCGTGGAGCTATGCGCACGTGGGGAGGGAGATTGTGTTGGATCACAGGGAGAGTCCGTTTTTGAAGGCGAGCAATGATCTGGTGCGTGCGCATAACTTGGAGGTGCATTTGCACTTGGTGGATGGGTACCATGGGAAGGGGAAGAGGTTCTGTTTGGCGTCGAAGCGGGACATAGCGCTTGTGAACAAGAGCTGTGACTTTCTGAGGAGTGAGTACGGTGTTCCGCCGCATTGGCGGCAGGACGAGAATAAAGGGATGGTGAGAAGCAGAGATGGAAGGTGGGTTTTGCCGGAGCGACCCAGATTGGAGGCTCATCCACCGGATATGGCCCACCTTCTCCAGCAAGTGCTAGAGAACCATCTCACAGGTCAGCAATTAGAaaccacttaa 1533 0.5245 MASVLPLYHTLPSLSQALHSRPHTTFNTSTTLFFHKNKPSPILNNTNTRYTPLRCSSTTSNLIPEADQEYFEGAETLEPPLSQVWKEIQGINDWEGIIDPTMNPHLRKEIIRYGELAQASYDSFDFDPHSKYCGTCKYHPSHFFDKLNMSGTGYTISRYLYATSNVNLPNFFQKSNLASVWSPHANWMGYVAVATDKDQVKRLGRRDIVIAWRGTVTYVEWIHDLKDILRPALFSSDPTIKVESGFYDLYTKKEDSCSYCSFSAREQVLSEVKRLLQYYQEEEISITVTGHSLGAALAILSAYDIAELKLNVVEEGAKIPVTVFSFAGPRVGNLKFKERCEGLGVKVLRVVNVHDVVPTVPGIITNEKFQFQRYIEDALSFPWSYAHVGREIVLDHRESPFLKASNDLVRAHNLEVHLHLVDGYHGKGKRFCLASKRDIALVNKSCDFLRSEYGVPPHWRQDENKGMVRSRDGRWVLPERPRLEAHPPDMAHLLQQVLENHLTGQQLETT 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3104 510 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 71 498 - -
Ssu3g3104 510 PANTHER PHOSPHOLIPASE A1-IGAMMA3, CHLOROPLASTIC 71 498 - -
Ssu3g3104 510 SUPERFAMILY alpha/beta-Hydrolases 105 402 IPR029058 -
Ssu3g3104 510 Pfam Lipase (class 3) 209 363 IPR002921 GO:0006629
Ssu3g3104 510 CDD Lipase_3 159 397 - -
Ssu3g3104 510 Gene3D alpha/beta hydrolase 84 489 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3104 Ssu-Chr3 86899866 86901749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3104 81 498 Acyl Lipid Metabolism Gene Families AT1G51440 73.427 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3104 - - gmx:100795661 838.18