Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3096 ATGGACGACGTTTGCGAAGGGAAAGATTTCACGTTCCCGAAGCAGGAGGAGAAGATTCTAGACTTGTGGTCCCAAATCGACGCATTCCACACTCAGCTAGCTCTCACGAAGGACAAGCCGGAATACATCTTCTACGACGGCCCTCCCTTCGCCACCGGGCTCCCCCACTATGGCCACATCCTCGCCGGCACCATCAAGGACATCGTCACGCGCTACCACTCCATGACGGGCCACCACGTCACGCGCCGCTTCGGCTGGGACTGCCACGGCCTCCCCATCGAGAACGAGATCGACAAGAAGCTCGGCATCAAGAAGCGCGAGGACGTCCTCAAGCTCGGAATCGACAAGTACAACGAGGAGTGCCGCAGCATCGTCACGCGCTACGTCTCCGAGTGGGAGACCGTTATCACCCGCACCGGCCGATGGATCGATTTCGAGGACGATTACAAAACCATGGACCTCAAGTTCATGGAGTCCGTCTGGTGGGTTTTTGCGCAGTTATACGCCAAAAACCTTGTCTATAAAGGTTTCAAGGTCATGCCGTATAGCACCGGCTGCAAAACTCCGCTCTCTAATTTCGAGGCTGGTCAGAATTACAAGGATGTATCTGATCCTGAAGTATTCATGACTTTTCCAGTCTTGGGCGATCCACATGGTGCATCTTTTGTAGCGTGGACAACAACTCCATGGACTCTTCCCAGCAATCTTGCTCTGTGCGTCAATGCCAATTTTATCTATGTGAAGGTTCGCAATAAGTACTCAGGTAAAGTTTATATTGTTGCTGAATCTCGTCTGTCTGCAATCCATAACCCTAAGGAGACACCCAGAGAAGCTGTTGTTAATAGTTCAAATGATGTTACTAAAAATACAAATGCAAAGACCAAGGGAGCTTCAGGTGGAAAAACAGAAAATGTGTTGGATTCTTTTGAAGTGCTGGAGAAAGTCTCAGGGGCATCATTAGTGGGGATAAAGTATGAACCattatttgattactttaagGAGTTATCTGATACAGCTTTTAGAGTTGTCGCCGACAATTATGTTACTGATGACAGTGGTACTGGTGTTGTCCATTGTGCCCCTGCTTTTGGTGAAGATGATTTCCGTGTTTGCAttgataatcaaattattaacaaGGATAATCTAACTGTAGCTGTTGATGATGATGGCTGCTTTACTGAAAAAATTACTGATTTTAGTGGATGCTACATCAAACATGCTGACAAGGATATCGTTGAAGCTGTAAAGGTTAAGGGTAGGTTGTTTAAATGTGGAGCTTTTACACATTCTTATCCATACTGCTGGAGATCTGATACCCCTCTTATTTACAGAGCTGTTCCAAGCTGGTTTGTTAGAGTGGAGTTGTTGAAAGAGCAATTGTTGGAAAATAATAAGCAGACCTACTGGGTCCCTGATTTTGTCAAGGAAAAGCGATTTCACAATTGGCTGGAAAATGCAAGAGATTGGGCAATTAGTCGTAGTAGATTTTGGGGGACCCCTCTCCCTATATGGATTAGTGAGGATGAGAAGGAAATAGTTGTCATAGATTCTATTGCAAAACTTGAAAAGCTTTCAGGTGTAAAGGTGTTTGACCTTCATCGTCACAACATTGATCATATTACAATTAAATCTGACAGTGGTCGTGTACTTCGACGCGTTGATGATGTGTTTGACTGCTGGTTTGAGAGTGGATCCATGCCTTATGCATATATCCATTATCCTTTTGAAAATGTTGAGCTGTTTGAGAAGAATTTTCCTGGCCATTTTGTTGCTGAAGGGCTGGATCAAACCCGTGGTTGGTTTTATACCCTTATGGTGCTGGCTACTGCATTATTCGGCAAGCCTGCGTTTAGGAATCTAATCTGCAATGGACTTGTCCTGGCTGAAGATGGGAAAAAGATGagtaaaagcttgaaaaatTATCCTTCACCAATGGAAGTTATTAATGATTATGGAGCGGATGCCTTGCGATTGTATCTTATCAACTCTCCTGTTGTGCGTGCTGAGCCATTTCGTTTCAAGAAGGAAGGAGTTTATGGTGTTGTTAGGGATGTGTTCCTTCCTTGGTATAATGCATATCGGTTCCTTGTTCAAAATGCAAAGAGGCTTGAAATTGAAGGTCTAGCACCTTTTGTCCCCTTTGATCAGGCCACACTTCTGAAGTCATCGAATGTTCTTGATCAGTGGATTAACTCAGCCACCCAAAGCCTTGTTCATTTTCTCCGACAAGAAATGGATGGTTACCGCCTTTACACGgTGGTTCCTTATCTTCTGAAGTTTCTTGATAACCttacaaatatttatgtaaGGTTCAACCGTAAGAGACTTAAAGGTCGTTCTGGGGAAGAAGACTGCAGGATAGCACTATCAACTCTTTACAATGTGCTTTTGTTATCCTGTAAAGTGATGGCTCCTTTTACACCTTTCTTCACTGAGGTGCTCTATCAAAATATGCGAAAAGTTTGTAATGGATCAGAGGAAAGCATACACTATTGCAGTTTTCCTACAGAAGAAGGAAAgAGGGGAGAACGAATTGAGCAGAGTGTCTCAAGGATGATGACAATAATTGATCTGGCCAGAAACATTCGTGAGCGTCACAACAAGCCTCTTAAGACTCCACTAAGGGAGATGGTTATAGTTCATCCCGATGCAGACTTCCTTGATGACATAAATGGAAAATTGAAGGAGTATGTGCTGGAGGAACTCAATGTACGATCCCTTGTTCCATGTAATGATACTTTAAAATATGCATCTTTACGTGCCGAGCCTGAATTTAGTGTTTTAGGTAAGAGACTAGGAAAATCCATGGGCATTGTTGCCAAAGAAATCAAAGCAATGTCACAGGAAAATATTTTGGCTTTTGAGAATGCTGGAGAAGTCACCATTGCAAATCACTGTTTGAAGCTGACTGATATTAAGGTTCTCCGTGATTTTAAACGACCTGATGGTATGACTGAGAAGGACGTTGATGCTGCTGGAGATGGTGATGTGCTAGTGATATTGGACTTGCGTCCTGATGAGTCATTGTTTGAGGCTGGTGCTGCTCGAGAGATTGTTAATAGGATTCAAAAGTTACGGAAGAAAGTTGCTCTTGAACCAACTGACATGGTGGAGGTTTACTTTGAATCATTAGATGATGACAAATCAGTCTCTCAGAGAGTTTTGCTTTCACAGGAATCCTACATCAGAGATGCTATTGGTACTCAGTTGCTTCCACATTCTCTGTTGCCTGCTCATGCAGTTGTCCTTGGCGAAGAGAGGTTCCATGGGATAGCCGGCATGTCATTTGGTATCACTTTGACAAGACCTGCATTGATGTTTAACGTAAAAGCCATTCTTTCACTGTTTACAGGGGACGCAAAACGTGCACATAATTTGCAAACTTACCTGCTATCAAGAGATCATTCGAATTTGAAGTCTGAGTTTCAAAATGGAAATGGAAAGAAAATTGTTGATTCAATTGATCAGCAACCTGCTGTGGAAGTGGTTCTTGGCGAGCATGTCTTTCTCACTGTGGGGGACTATTACCTTGCTAGAAAATCTGACTGA 3549 0.4286 MDDVCEGKDFTFPKQEEKILDLWSQIDAFHTQLALTKDKPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYHSMTGHHVTRRFGWDCHGLPIENEIDKKLGIKKREDVLKLGIDKYNEECRSIVTRYVSEWETVITRTGRWIDFEDDYKTMDLKFMESVWWVFAQLYAKNLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVSDPEVFMTFPVLGDPHGASFVAWTTTPWTLPSNLALCVNANFIYVKVRNKYSGKVYIVAESRLSAIHNPKETPREAVVNSSNDVTKNTNAKTKGASGGKTENVLDSFEVLEKVSGASLVGIKYEPLFDYFKELSDTAFRVVADNYVTDDSGTGVVHCAPAFGEDDFRVCIDNQIINKDNLTVAVDDDGCFTEKITDFSGCYIKHADKDIVEAVKVKGRLFKCGAFTHSYPYCWRSDTPLIYRAVPSWFVRVELLKEQLLENNKQTYWVPDFVKEKRFHNWLENARDWAISRSRFWGTPLPIWISEDEKEIVVIDSIAKLEKLSGVKVFDLHRHNIDHITIKSDSGRVLRRVDDVFDCWFESGSMPYAYIHYPFENVELFEKNFPGHFVAEGLDQTRGWFYTLMVLATALFGKPAFRNLICNGLVLAEDGKKMSKSLKNYPSPMEVINDYGADALRLYLINSPVVRAEPFRFKKEGVYGVVRDVFLPWYNAYRFLVQNAKRLEIEGLAPFVPFDQATLLKSSNVLDQWINSATQSLVHFLRQEMDGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEEDCRIALSTLYNVLLLSCKVMAPFTPFFTEVLYQNMRKVCNGSEESIHYCSFPTEEGKRGERIEQSVSRMMTIIDLARNIRERHNKPLKTPLREMVIVHPDADFLDDINGKLKEYVLEELNVRSLVPCNDTLKYASLRAEPEFSVLGKRLGKSMGIVAKEIKAMSQENILAFENAGEVTIANHCLKLTDIKVLRDFKRPDGMTEKDVDAAGDGDVLVILDLRPDESLFEAGAAREIVNRIQKLRKKVALEPTDMVEVYFESLDDDKSVSQRVLLSQESYIRDAIGTQLLPHSLLPAHAVVLGEERFHGIAGMSFGITLTRPALMFNVKAILSLFTGDAKRAHNLQTYLLSRDHSNLKSEFQNGNGKKIVDSIDQQPAVEVVLGEHVFLTVGDYYLARKSD 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3096 1182 SUPERFAMILY Nucleotidylyl transferase 10 683 - -
Ssu3g3096 1182 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 688 936 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ssu3g3096 1182 MobiDBLite consensus disorder prediction 273 299 - -
Ssu3g3096 1182 Pfam Domain of unknown function (DUF5915) 896 1054 - -
Ssu3g3096 1182 MobiDBLite consensus disorder prediction 276 298 - -
Ssu3g3096 1182 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 49 60 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ssu3g3096 1182 CDD Anticodon_Ia_Ile_ABEc 673 860 IPR033709 GO:0000049
Ssu3g3096 1182 Gene3D HUPs 4 209 IPR014729 -
Ssu3g3096 1182 Gene3D HUPs 394 671 IPR014729 -
Ssu3g3096 1182 PANTHER BNAUNNG00270D PROTEIN 1 1110 - -
Ssu3g3096 1182 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 201 431 IPR009008 GO:0002161|GO:0006418
Ssu3g3096 1182 Pfam Anticodon-binding domain of tRNA ligase 727 876 IPR013155 GO:0004812|GO:0006418
Ssu3g3096 1182 Pfam tRNA synthetases class I (I, L, M and V) 19 272 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ssu3g3096 1182 Pfam tRNA synthetases class I (I, L, M and V) 307 669 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ssu3g3096 1182 PANTHER SOLEUCYL-TRNA SYNTHETASE 1 1110 IPR023586 GO:0004822
Ssu3g3096 1182 Gene3D - 675 867 - -
Ssu3g3096 1182 Hamap Isoleucine--tRNA ligase [ileS]. 2 1082 IPR023586 GO:0004822
Ssu3g3096 1182 CDD IleRS_core 398 673 - -
Ssu3g3096 1182 PRINTS Isoleucyl-tRNA synthetase signature 42 53 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Ssu3g3096 1182 PRINTS Isoleucyl-tRNA synthetase signature 552 565 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Ssu3g3096 1182 PRINTS Isoleucyl-tRNA synthetase signature 592 601 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Ssu3g3096 1182 PRINTS Isoleucyl-tRNA synthetase signature 223 246 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3096 Ssu-Chr3 86688939 86708543 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3096 K01870 - gmx:100791830 2259.18