Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3082 ATGGCTAACAATACCATTCATGGGAACACTGAAACTGCTCAACCCAACATTGCTTCCACAAAGCAGCCTCTCCCTCCTGCTAAGACTGTCGATTCTCAATCTGTTCTCAGAAGGCTGCAATCTGAATTGATGGCTTTGATGATGAGTGGAGATTCTGGGATATCTGCGTTTCCTGAGGAGGACAACATATTCTTTTGGAAAGGAACAATAACAGGAAGCAAAGATACGGTGTTTGAAGGCACAGAGTACAAGCTGTCCCTCTCCTTTCCCAATGATTATCCTTTTAAGCCTCCAAAAGTCAAGTTTGAAACAACATGTTTCCATCCCAATGTGGATGTGCATGGCAATATATGCTTGGACATACTCCAGgacaaatGGTCTTCTGCTTATGATGTCAGGACAATTCTTCTTTCCATCCAAAGTCTGCTTGGAGAGCCAAATATTAGTTCACCACTAAATCCACAAGCAGCGCAGCTTTGGAGCAATCAAGAAGAATACAGGAAGATGGTGGAGAAGTTGTACAAATCTGCAAATTGA 537 0.4227 MANNTIHGNTETAQPNIASTKQPLPPAKTVDSQSVLRRLQSELMALMMSGDSGISAFPEEDNIFFWKGTITGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETTCFHPNVDVHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEEYRKMVEKLYKSAN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3082 178 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 10 176 - -
Ssu3g3082 178 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 107 122 IPR023313 -
Ssu3g3082 178 Gene3D Ubiquitin Conjugating Enzyme 28 178 IPR016135 -
Ssu3g3082 178 SMART ubc_7 37 178 - -
Ssu3g3082 178 MobiDBLite consensus disorder prediction 1 32 - -
Ssu3g3082 178 PANTHER BNAC06G03670D PROTEIN 10 176 - -
Ssu3g3082 178 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 34 178 IPR000608 -
Ssu3g3082 178 CDD UBCc 37 174 IPR000608 -
Ssu3g3082 178 SUPERFAMILY UBC-like 31 174 IPR016135 -
Ssu3g3082 178 Pfam Ubiquitin-conjugating enzyme 38 172 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3082 Ssu-Chr3 86511242 86512300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3082 36 143 Miscellaneous Gene Families AT3G17000 31.858 8.76e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3082 K06688 - gmx:100305664 337.035