Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3078 ATGGTGAGAAAACATGGCTGGCAATTACCTGCTCACACTTTTCAGGTTGTTGCAATCACTGTATTCTGCTTGTTGGTGATTGCTTTCTATGCTTTCCTTGCTCCCTTCATCGGAGGACATATATTGGAATACACCTTCATTGCTGTTTACTCTCCTGTAGCACTCATTGTGTTCATTCTTTACGTCAGATGCACTGCAATTAACCCTGCAGATCCCGGCATTATGTCTAAGTTTGACCCTGGAGTGGGACATAAGTTCAATTCTGCTCATGGTTTATCAGGGCAGCATCATGTTTCTGAACATGATCGCATTGCTGCCAGAGAGCAATATTCTCCGTCATCTGCTGCTTCCAAAAGGTCTATGACAAATATGAGCAAGAAAAGCTCAGTTGAAGATCTTGACAGAGTAGATAATTCAAGGGAACAGAATAACCGAAACTCATGTAATGTAATTGGAGGAATTTTCtgcatatttttttcacatgaaGATTGCTGGAAACAGGAAGCAACAGTTGATGAGCAGGGTGGTGGTGAAGATGCTCTGTTCTGCACTTTGTGCAATGCTGAGGTGCGCAAGTTCAGCAAACACTGTAGAAGTTGTGATAAATGTGTTGATGGCTTTGATCACCATTGTCGGTGGCTTAACAATTGTGTGGGTCACAAAAATTACAGTTCTTTTATTGCTCTCATGGCTTTTAGTCTTGCGTGGCTAGTTATTGAGGCTGGAGTGGGTGTTACTGTTTTCGTGCGTTTCTTTGTTAACAAGAGAGGAATGGAATCTGAAATCATTGATAGACTTGGAAATGGATTCTCTCGTCCCCCATTTGCAGCTGTTGTGGTCGTATGTACTGTAGTTTCTATCTTGGCTTGTGTTCCTTTGGGTGAGCTTTTCTTTTTCCACATGATACTAATCAGGAAGGGCATCACAACATATGAATATGTTGTAGCAATGAGAGCCATGAGTGAAGCACCTGCAGGGGCATCTGTGGATGAGGATTTGCCAAATGTACTTTACTCTCCAACAGGCTCAGCCACAACTGGATTGAGTGGAGGAAGTTCTCTTGGTTTGCAGTATAAAGGGGCTTGGTGTACCCCTCCTAGGGTATTCGTGGATTATCAGGATGAAGTTGTGCCTCACTTGGAGCCTGGAATGCTACCGTCAACTGTTGATCCAGATGCAGCTGGGATTGCAGAAAGAGGGCAAAAGATGCCAAAAAGACCTGTTCGTATTAGTGCTTGGAAGCTTGCTAAGTTGGATTCACAAGAAGCAATGAGAGCAGCTGAAAAAGCCAGGGCATCTTCTTCAGTTTTGCGACCTATAGATAACCACCGTCTACCAGATGTAGAATTGAGCTCTAGTGGCAACATGAGCATCAGAAGTAGTTTGAGCACAGAGACTGGAACTAACAAGGAAATAAAACATGAGTTGAGATTGTCTCCGGTGAGAAATTCTATTGCTCCTAGTCAAGGAAGTCGGGATGAGTACGAGACTGGAACTCAAAGTATGAGTAGTTTCAGTAGTCCTAGCCATGTTCAAGAAGCAGTTACACTCAGCCCTCTTCCACAGGGTCGCAGTTTGGGTGGCTTCAGGGCAGGAACCTCAATTCCTAGTTTGGTGCCTGAGCGTCCTTTAACTTCTAAAGTAACATTGTCAAACTTAAGGAACCCAATATCTAATCCTTCCCTTGGTTTTGATGGGAGGACAACAATGCCAACAATGCCAAAAGGAATTGGCAATGATCCGTTGTTGCTTTCAGCTTCTAACACGTCTATTCTAAGAGATGTGAAACGGACATCAGTTGTTTGGGATCAAGAAGCTGGCAGATATGTATCGGTTCCTTTATTGCCCTCAGAAGTTCGAAATAGGTCATCCATGCGAATAGAGTTACCAAATTTAAATGCAGAAACAAGCAGTATTGGGAGAAAACCAGTGATTCCTCAGCAGGAGTTGTCATCATCTGCACCCAAGTCTCCAGGGCAGCATATACAGAATCTGATGTATACAGGAGATTCTATCTTTTATGGAGGTCCATTTTTGAGTGTCCCTGTTAAGGATGGTTCGAAAAATGAAAGACATTTGGCATCAGCGGATGCCCAAGATAGCACATCAGTGAACTTGCCCCAAGAGCCAAGATATAAAAGGGATTCACTTTCAAATCAGCTTCCCGTGTTTGTCCCTGGTGGGTTTGAGAATACCCTTCAACCTCGTTCTGGCGTAAATTAG 2223 0.4318 MVRKHGWQLPAHTFQVVAITVFCLLVIAFYAFLAPFIGGHILEYTFIAVYSPVALIVFILYVRCTAINPADPGIMSKFDPGVGHKFNSAHGLSGQHHVSEHDRIAAREQYSPSSAASKRSMTNMSKKSSVEDLDRVDNSREQNNRNSCNVIGGIFCIFFSHEDCWKQEATVDEQGGGEDALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGHKNYSSFIALMAFSLAWLVIEAGVGVTVFVRFFVNKRGMESEIIDRLGNGFSRPPFAAVVVVCTVVSILACVPLGELFFFHMILIRKGITTYEYVVAMRAMSEAPAGASVDEDLPNVLYSPTGSATTGLSGGSSLGLQYKGAWCTPPRVFVDYQDEVVPHLEPGMLPSTVDPDAAGIAERGQKMPKRPVRISAWKLAKLDSQEAMRAAEKARASSSVLRPIDNHRLPDVELSSSGNMSIRSSLSTETGTNKEIKHELRLSPVRNSIAPSQGSRDEYETGTQSMSSFSSPSHVQEAVTLSPLPQGRSLGGFRAGTSIPSLVPERPLTSKVTLSNLRNPISNPSLGFDGRTTMPTMPKGIGNDPLLLSASNTSILRDVKRTSVVWDQEAGRYVSVPLLPSEVRNRSSMRIELPNLNAETSSIGRKPVIPQQELSSSAPKSPGQHIQNLMYTGDSIFYGGPFLSVPVKDGSKNERHLASADAQDSTSVNLPQEPRYKRDSLSNQLPVFVPGGFENTLQPRSGVN 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3078 740 MobiDBLite consensus disorder prediction 110 127 - -
Ssu3g3078 740 ProSiteProfiles DHHC domain profile. 181 231 - -
Ssu3g3078 740 Pfam DHHC palmitoyltransferase 180 315 IPR001594 GO:0016409
Ssu3g3078 740 MobiDBLite consensus disorder prediction 482 513 - -
Ssu3g3078 740 MobiDBLite consensus disorder prediction 685 706 - -
Ssu3g3078 740 MobiDBLite consensus disorder prediction 457 513 - -
Ssu3g3078 740 PANTHER PROTEIN S-ACYLTRANSFERASE 19-RELATED 9 538 - -
Ssu3g3078 740 MobiDBLite consensus disorder prediction 109 140 - -
Ssu3g3078 740 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 9 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3078 Ssu-Chr3 86426701 86435474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3078 182 312 Lipid Metabolism Gene Families AT4G22750 28.244 4.19e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3078 K20027 - gmx:100805779 1337.01