Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3076 ATGAACTCGCTCCTCCGATCCACTCTCAGGACCAAGGCATgcgttttcttcttcttctttttggttACTGCTTCATCTTTAGCATATGCTGCGCTTTCCAGAAGGGTTCAGGAAAATCTCCTTCAGGTTCCCTTATGGTCTAGATCAAATAGCACGGAGTCTTCCTTGGCAAAGGATAATTCAACTAATGATGTAAAAAATGGACAAGGGTTCAAAGGCCATGGTATGCTTGCTCCTTTCACGGCTGGGTGGCAGACTACTGATTTGCATCCTCTGGTTATAGAAAAGTCAGAGGGAAGCTATGTATATGACGTTAATGGGCAGAAATATCTTGATGCACTTGCTGGTCTATGGGCCACTGCTTTAGGGGGAAGTGAGCCACGCCTTGTTGATGCCGCCATTGCACAATTAAAGAAGTTGCCATTTTACCATTCCTTTTGGAATCGAACCACACTACCTTCTTTGGATCTAGCCAAGGAACTCCTAGAAATGTTCACAGCCAGAAAAATGGCGAAAGCTTTTTTTGTTAATAGTGGATCAGAAGCCAATGATACTCAGGTGAAACTTGTATGGTATTATAACAATGCGCTTGGAAGACcaaataagaagaaattcaTAGCTCGTGCTAAATCGTATCATGGTTCAACATTGATAGCAGCCAGTCTATCTGGCCTTCCAGCTCTGcatcaaaaatttgatttgcCAGCTCCTTTTGTATTGCACACTGACTGTCCACATTACTGGCGGTACCATCTTCCAGGTGAGACAGAGGAAGAATTTTCAACCAGATTGGCCAACAATTTAGAGCAGCTGATTCTGAAAGAGGGACCAGAGACAatTGCTGCATTTATTGCTGAACCTGTAATGGGGGCAGGAGGTGTAATACTTCCACCATCAACTTATTTTGAGAAGGTCCAAGCCATTGTCAAGAAGTATGACATTCTTTTTATTGCAGATGAGGTAATCTGTGCCTTTGGAAGGCTTGGGACAATGTTTGGATGTGACAAGTACAACATTAAGCCAGACCTTGTATCCCTAGCTAAGGCACTGTCTTCTGCATATTTGCCAATTGGAGCTGTCCTTGTAAGCCCAGAAGTTTCAGAAGTTATACACACTCAAAGCAACAAACTTGGTACATTTTCCCATGGATTCACTTATTCTGGACACCCCACAGCCTGTGCCGTTGCAATTGAAGCACTCAAGATCTATAAGGAAAGAAATATTGTTGACCAAGTGAACAAGATCTCCCCAAGGTTCCAAGATGGCATAAAAGCTTTTTCTGACAGTCCCATCATTGGAGAGATACGGGGAACTGGCTTGATTCTAGGCACCGAGTTCGCAGACAACAAGTCACCTAGTGATCCGTTTCCTCCCGAATGGGGAGTAGGTGCCTATTTTGGAGCACAATGTCAGAAGCATGGGATGTTAGTTCGTGTAGCGGGAGATAACATCATGATGTCTCCACCATATATTATATCTCCAGGAGAAGTTGAGGAGTTAATCAGCATTTATGGGAAGGCCTTGAAAGAAACGGAAAAGAAGGTACAGGAGCTCAAGTCTCAGCGCAAGTAG 1572 0.4243 MNSLLRSTLRTKACVFFFFFLVTASSLAYAALSRRVQENLLQVPLWSRSNSTESSLAKDNSTNDVKNGQGFKGHGMLAPFTAGWQTTDLHPLVIEKSEGSYVYDVNGQKYLDALAGLWATALGGSEPRLVDAAIAQLKKLPFYHSFWNRTTLPSLDLAKELLEMFTARKMAKAFFVNSGSEANDTQVKLVWYYNNALGRPNKKKFIARAKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYHLPGETEEEFSTRLANNLEQLILKEGPETIAAFIAEPVMGAGGVILPPSTYFEKVQAIVKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYLPIGAVLVSPEVSEVIHTQSNKLGTFSHGFTYSGHPTACAVAIEALKIYKERNIVDQVNKISPRFQDGIKAFSDSPIIGEIRGTGLILGTEFADNKSPSDPFPPEWGVGAYFGAQCQKHGMLVRVAGDNIMMSPPYIISPGEVEELISIYGKALKETEKKVQELKSQRK 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3076 523 SUPERFAMILY PLP-dependent transferases 75 510 IPR015424 -
Ssu3g3076 523 CDD OAT_like 86 508 IPR005814 GO:0008483|GO:0030170
Ssu3g3076 523 Coils Coil 501 523 - -
Ssu3g3076 523 Gene3D Aspartate Aminotransferase, domain 1 92 508 IPR015422 GO:0003824
Ssu3g3076 523 Pfam Aminotransferase class-III 91 507 IPR005814 GO:0008483|GO:0030170
Ssu3g3076 523 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 316 353 IPR005814 GO:0008483|GO:0030170
Ssu3g3076 523 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 35 518 - -
Ssu3g3076 523 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 35 518 - -
Ssu3g3076 523 Gene3D - 126 408 IPR015421 GO:0003824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3076 K16871 - gmx:100792355 959.903