Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3067 ATGGGAGAAGTGGCTGAAGCTCAATATTTCAGATCAGAAATAGCTCTGCTGAAGCTGAACTACTCGGATGCCACCTTCAAACCCCCACTCTCTCCCTTGTTGATCCACATTGATCCCATCATCCCCAGTGGCCACACTTCTTCTGCCTCAGAATCTGATCCATCACCCATTGCCCTGCAGCACCAGCAGGATCAACATCCCAAAGATGCGTGGCTTCCTATCACTGAATCCAGAAATGGGAATGCCTATTATGCAGCCTTCCATATTCTTAATTCCAACATTGGATTCCAGGCTCTCATGCTTCCCGTTGCCTTTGCCACTCTTGGTTGGGCATGGGGTACAGTATGTTTGTCAGTAGCATTTGTTTGGCAGCTCTATGCCATATTTCTTCTTGTTCAACTTCACGAATCCGTCCCTGGAATTCGTCACAGCAGATACCTCTTCCTCGCCATGGCTGCCTTCGGTAAAAAGTTAGGGAAGGTGGCAGCATTATTCCCCGTAATGTACCTTTCGGGAGGTACATGCGTCATGCTTATCATCACCGGTGGTGGGACCATGAAACTATTATTCAAGACGCTTTGCGACTATGATCATGGGAACACATGCAATGCCCACTCCCTTAGCGGGGCTGAGTGGTTCTTGGTGTTTACCTGTGTGGCCATTCTCACAGCACAGTTGCCCAACCTCAACTCAATGGTCATGGTTTCTCTCCTCGGCGCTGTTGCCTCCATCACTTATTGCACCCTCTTTTGGGTTCTCTCTGTTAAGAAGGGTAGGCCAATCAACGTATCCTACAGCTCATCCCTGTCTCAAGACTCCACAGTAACGGCTAAGATCACTGACGTTCTGAATGCCATTGGAATCATCGTGCTAGCCTTCAGAGGTCATAATGTTTTGCTCGAGATACAGGGGACGCTGCCTTCGAATTTCGAAAAAACATCCAAAGAACCAATGCTCAGAGGAGTGAGCGTGTCATATGTACTCATTAGCGTGTGCGTGTTTCCCCTCGCAATTGCCGGATTCTGGGCCTACGGAAACCAGATATATGATGGAGGATTGTTAACTTCGTTCCCTCAATTCCACAAGAGGCAACTAACAAAATTCTCTATGGGTGCAATATATGTTCTGATAATAATACATTGTTTGAGCAGCTACCAAATCTATGCCATGCCCGTTTTTGACAACCTGGAGCTAAGATACACGAGCATAAAGAATCAGAGATGTCCACGATTGGTGAGAGCATGCTTGCGCCTATTCTTTGGGGGGTTGACATTTTCTATAGCAGTCACGTTCCCATTCCTGCCAAGCCTAGCAGCACTGCTTGGAGGGATGACCCTGGTGCCCATCACATATGCATACCCCTGTTTCATGTGGTTGGCCCTCAAGAAACCTACACCAAGAGGTGTGGTTTGGTGCTTCAACGTTGCACTCGGCTGCTTAGGGATGTTTCTTAGTGCTCTTTTGGTAGCTGCAGCTACACGGACTCTAGTTGACAAAGGCCTACCTGCAAACTTCTTCAAACCATAA 1527 0.4774 MGEVAEAQYFRSEIALLKLNYSDATFKPPLSPLLIHIDPIIPSGHTSSASESDPSPIALQHQQDQHPKDAWLPITESRNGNAYYAAFHILNSNIGFQALMLPVAFATLGWAWGTVCLSVAFVWQLYAIFLLVQLHESVPGIRHSRYLFLAMAAFGKKLGKVAALFPVMYLSGGTCVMLIITGGGTMKLLFKTLCDYDHGNTCNAHSLSGAEWFLVFTCVAILTAQLPNLNSMVMVSLLGAVASITYCTLFWVLSVKKGRPINVSYSSSLSQDSTVTAKITDVLNAIGIIVLAFRGHNVLLEIQGTLPSNFEKTSKEPMLRGVSVSYVLISVCVFPLAIAGFWAYGNQIYDGGLLTSFPQFHKRQLTKFSMGAIYVLIIIHCLSSYQIYAMPVFDNLELRYTSIKNQRCPRLVRACLRLFFGGLTFSIAVTFPFLPSLAALLGGMTLVPITYAYPCFMWLALKKPTPRGVVWCFNVALGCLGMFLSALLVAAATRTLVDKGLPANFFKP 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3067 508 Pfam Transmembrane amino acid transporter protein 79 490 IPR013057 -
Ssu3g3067 508 PANTHER LYSINE HISTIDINE TRANSPORTER-LIKE 7 65 501 - -
Ssu3g3067 508 PANTHER OS05G0424000 PROTEIN-RELATED 65 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3067 Ssu-Chr3 86203025 86207406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3067 61 508 Organic Solute Cotransporters AT1G47670 50.893 3.68e-154 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3067 - - gmx:100817315 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3067 3 86203025 86207406 Ssu3g3067 3 86203025 86207406 ECH