Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3063 ATGGGGAGCGTTTCTTCAGAAGATGGTTCCGACCAACAGAGCGAGCGTTGCGGAAGCTACAGCCTCAGTGCTGACGTCAGCGAGTCGGAGAGTTGCGGCAGCTTCTCCGCTCGCCGTTTCGGCGCCGAGGGGGCCTCCAGCTCCGCCAACCTCTCGCCTCGTCCTCTCGCCGCTCACTTCAGCTTCCCGGCGCCGCAGGTAATGCTTCCCGTCATCGGCGGCAAAGACGTCGTCGTTTGGGATCACAAGCGCGACCTCGATTTGTCCGAAGTGGAAATGATGAAAGAGAGGTTCGCTAAGCTTCTTCTCGGAGAAGACATGTCTGGTGGTGGAAAGGGGGTTTGCACAGCACTTGCAATCTCCAATGCAATAACCAATCTCTCTGCAACTGTGTTTGGGGAACTGTGGAGGTTGGAGCCTTTGGCGCCACAGAAGAAGGCAATGTGGCGTAGGGAAATGGAGTGGCTGCTATGCGTGAGTGATTCAATAGTGGAGCTGGTGCCATCTGTGCAGCAGTTTCCTGGGGGTGGAACCTATGAGGTGATGGCAACGCGTCCTCGCTCCGATTTGTACATCAACCTTCCGGCTCTGAAGAAGCTTGATGGGATGCTGCTTAGTATTCTTGACGGGTTTCATGACACGCAGTTTTGGTACGTTGACAGGGGGATTATATTGGGTGATTCAAAGGATTGTGATGCCTATGGTAGACCTTCGGTTAGGCAAGAGGAGAAATGGTGGCTCCCCTCTCCCAAGCTTCCGCCAAATGGCTTGTCCGAGGAAAGTAGGAAAAGGTTGCAACAGTGTAGGGATTGCACCAATCAGATACTAAAGGCTGCCGTTGCAATTAATAGTTCTGTGCTTGCTGAAATGGAGATTCCCCGCCCCTATGTAGAGTCCTTGCCCAAGAATGGAAAGGCTTGTCTAGGGGATATAATCTATCGATACATAACTGCGGACCAGTTTTCGTCTGAATGTCTCCTTGATTGCCTGGATCTTTCGTCAGAGCACCACACTCTCGATATAGCTAATAGAATTGAGGCTGCTATACACGTATGGAGGTTGAAGGACCATAAGAAACATCTAAGTTCAGCAAAATCCAGACGGTCTTGGGGTGGAAAGGTGAAGGGACTTGTTGCTGACGGTGAAAAGAACCATTTTCTTGCCCAACGGGCAGAGACACTTCTAGAAAGCTTGAAACACCGATTTCCTGGGCTCCCTCAGACTGCTCTAGATATGgccaaaattcaatataataagGATGTCGGACAGTCTATTCTTGAAAGTTATTCAAGAGTGATGGAGAGCTTGGCCTTTAACATAATGTCCAGAATTGATGATGTCCTTTAtgtagatgatagtataaagcGATGTGCAGCTGCAGATTCTCTCTCATTGTTCAGCAGGGGAGGTTTTGGTGGCATGCCCATCCAGAAGCGATTCTCTCCTAGTCCCTTCTCAATTCAACACACCCCATATGCCTCCCCATTTGCAACACCAACGTTCTGTTCCTCCTCTCCTGTTACTGGGAGCCCTTGCAGTCCAGTAAGGACACGTGATGTGAAGAGGAATGTTCCAAAGGATGGCACAGATTCGAAGGCCGAAAAGTTGGCCACATCTGAGTTTGAGAGGGTTTGGTCATACGCGGGAAACCTCAGTGCAGGGAGAGCGTCTGGCGATGCTCCAGAAAGAGACTGA 1695 0.4968 MGSVSSEDGSDQQSERCGSYSLSADVSESESCGSFSARRFGAEGASSSANLSPRPLAAHFSFPAPQVMLPVIGGKDVVVWDHKRDLDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMEWLLCVSDSIVELVPSVQQFPGGGTYEVMATRPRSDLYINLPALKKLDGMLLSILDGFHDTQFWYVDRGIILGDSKDCDAYGRPSVRQEEKWWLPSPKLPPNGLSEESRKRLQQCRDCTNQILKAAVAINSSVLAEMEIPRPYVESLPKNGKACLGDIIYRYITADQFSSECLLDCLDLSSEHHTLDIANRIEAAIHVWRLKDHKKHLSSAKSRRSWGGKVKGLVADGEKNHFLAQRAETLLESLKHRFPGLPQTALDMAKIQYNKDVGQSILESYSRVMESLAFNIMSRIDDVLYVDDSIKRCAAADSLSLFSRGGFGGMPIQKRFSPSPFSIQHTPYASPFATPTFCSSSPVTGSPCSPVRTRDVKRNVPKDGTDSKAEKLATSEFERVWSYAGNLSAGRASGDAPERD 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3063 564 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 1 564 - -
Ssu3g3063 564 Gene3D PRONE domain, subdomain 1 81 323 - -
Ssu3g3063 564 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 1 564 IPR038937 GO:0005085
Ssu3g3063 564 MobiDBLite consensus disorder prediction 1 27 - -
Ssu3g3063 564 Gene3D PRONE domain, subdomain 1 324 461 - -
Ssu3g3063 564 MobiDBLite consensus disorder prediction 506 535 - -
Ssu3g3063 564 MobiDBLite consensus disorder prediction 519 535 - -
Ssu3g3063 564 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 89 455 IPR005512 GO:0005085
Ssu3g3063 564 ProSiteProfiles PRONE domain profile. 81 461 IPR005512 GO:0005085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3063 Ssu-Chr3 86149956 86152868 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3063 - - gmx:100789706 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3063 3 86149956 86152868 Ssu3g3063 3 86149956 86152868 ECH