Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3062 ATGGAGACAGGTTCGGGCAGCCTGAGTAGGAAGAAAAGTGGTGGAAACGGACAGGTTCTAGACGGTTCCAATATTATGGAGTTGGTTGGAAACGAGCAAGTTTTCAGCAGCTTCGTGGACCATAAGTTTCAGGAGTTAGACAGAGACAGAGATGGCAAACTCTCTGTGAAAGAGCTTCAACCTGCCGTCGCTGACATAGGTGCTGCTCTTGGTTTGCCTGCTCACGGCACTAATCCTGATTCTGATCACATCTATTCCGAGGTCTTGAATGAATTCACACATGGGAAGCAGGAAGAAGTGAGCAAGACTGAGTTCAAAGAGGTTCTCTCTGACATTCTATTGGGTATGGCTGCTGGACTGAAGCGAGACCCAATTGTGATACTTCGCATTGATGGGGAAGATCTTCTGGAGTTTGTCAATGGTGCAGGTTATGAAGCTGAAATGGCATCCATATTCTCTCGGATTGAATCCCCTGACAGATCACTTCATGACCATATAATTGAAGCTCTGGGCAAGCTCACTGTTGAACAAGGGATTCCTCCTACGTCAGATTCTTGGgtTTATAGCAACATTGTGGAACTGGCACTGCTATCTCAAGATGGCTCTGATTTGGATAAGCCTGTTTCTCAAGAGACATTTTTGGAGGAATTTAAGATAGTAGCATTGAATGTGGCTAATCGTCTTAAAGAGCAACCTGTCATAGTCGCTCACAGTGAGAACACCTTTGATGGAAGTGGTGTTAAGAGACTATTATCCAACAAGTTTGAATTGGACAagACTTTGAACTCAGCTTTAGAGACTTTGCCTAAAGATCGAAATGGAAAGATGTCAAAGGAGTATCTACGGGTGGCGCTGGACACGGTGGCTCCATCTGCTGGTTTACCTCCAGTTGGTGCAATTGAAGAGATGGATAAGGTTATTGGGGAAGTCTTTAAGATGATGAATGCAGATGATGTGAGGATGATCAAAGAAGACGAGCTCAAGAAAATTTTAACTGAAATACTGGGGAACATCATGTTGCAGTTGGAGGGAAATCCCATATCAGTTTCTTCAAATTCGGTAGTGCACGAGCCGCTAGATTCATCTTCTACACTTCTGCAGCCATCCTCTAGTGAAACTGCAGCATAG 1128 0.4424 METGSGSLSRKKSGGNGQVLDGSNIMELVGNEQVFSSFVDHKFQELDRDRDGKLSVKELQPAVADIGAALGLPAHGTNPDSDHIYSEVLNEFTHGKQEEVSKTEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFVNGAGYEAEMASIFSRIESPDRSLHDHIIEALGKLTVEQGIPPTSDSWVYSNIVELALLSQDGSDLDKPVSQETFLEEFKIVALNVANRLKEQPVIVAHSENTFDGSGVKRLLSNKFELDKTLNSALETLPKDRNGKMSKEYLRVALDTVAPSAGLPPVGAIEEMDKVIGEVFKMMNADDVRMIKEDELKKILTEILGNIMLQLEGNPISVSSNSVVHEPLDSSSTLLQPSSSETAA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3062 375 Gene3D - 36 335 - -
Ssu3g3062 375 MobiDBLite consensus disorder prediction 1 20 - -
Ssu3g3062 375 ProSiteProfiles EF-hand calcium-binding domain profile. 34 69 IPR002048 GO:0005509
Ssu3g3062 375 SUPERFAMILY EF-hand 42 345 IPR011992 -
Ssu3g3062 375 Pfam EF-hand domain pair 42 108 IPR002048 GO:0005509
Ssu3g3062 375 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 1 373 - -
Ssu3g3062 375 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 1 373 - -
Ssu3g3062 375 SMART efh_1 260 288 IPR002048 GO:0005509
Ssu3g3062 375 SMART efh_1 38 66 IPR002048 GO:0005509
Ssu3g3062 375 SMART efh_1 306 334 IPR002048 GO:0005509
Ssu3g3062 375 ProSitePatterns EF-hand calcium-binding domain. 47 59 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3062 Ssu-Chr3 86136632 86140477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3062 18 373 EF-hand Containing Proteins AT4G38810 69.081 2.94e-174 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3062 - - gmx:100820516 657.521