Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3058 ATGGGAAACGAGGGTATTATGAAAGGTGTCACAAAGCTGCGAGTCAACCCCGGGAAGGCTACCATATTAGCTCTTGGCAAGGCTTTCCCTCACCAGCTTGTCATGCAAGAGTATTTAGTTGATGGATATTTCAGGGATACAAACTGTGACAATCCTGAGCTCAAGCAGAAGCTCACTAGACTTTGCAAAACAACCACAGTGAAAACAAGGTACGTGGTTATGTCAGAGGACATACTGAACAAGTATCCAGAGCTTGCGGCTGAAGGCATCCCCACAGTGAAGCAACGGCTAGAGATATGTAACGAGGCAGTGACAGAAATGGCCATTGAAGCTTCCCAAGCTTGCATCAAGAACTGGGGTGGATCTTTGTCAGACATAACACACTTGGTTTATGTGTCATCCAGTGAAGCTAGGCTACCTGGTGGTGACCTTTACCTAGCCAAAGGACTAGGACTGAGCCCTGATACTCAACGAATCATGCTCTATTTCGCTGGCTGCTCTGGAGGTGTGGCTGGCCTACGTGTTGCAAAAGACATAGCTGAGAACAACCCTGGAAGCCGAGTGCTGCTTGCTACCTCAGAAACTACAATTATTGGGTTCAAGCCACCAAGTGCAGATAGACCTTATGATCTTGTTGGGGTGGCACTCTTTGGGGATGGTGCTGGTGCCATGATAATTGGCTCAGACCCAGTCTTGGAAACTGAGAGGCCTCTATTTGAGCTTCACACTGCAGTTCAGGAATTTTTGCCACACACTGAGAAGAAAATTGATGGGAGGCTGACAGAAGAGGGGATAAGCTTCAAGTTAGCAAGGGAACTACCTCAAATAATTGAAGACAATGTTAAAGGCTTCTGTGACAAATTAATGAGTGTTGTTGGGTTTCAGAATCAGGAGTACAACAAGCTGTTTTGGGCTGTCCATCCAGGGGGGCCTGCCATCTTGAATCGCATTGAGAAGAGACTTGATTTGTTGCCAGAGAAGCTGAGTGCAAGTAGAAGAGCTCTCATGGATTATGGCAATGCTAGCAGTAATACCATTGTGTATGTGCTGGAGTATATGATAGAGGAGGGCGTCAAGATTAGAAAGGATGGCAGAGAAGATCCTGAATGGGGCTTGATACTTGCTTTTGGACCCGGGATTACATTTGAGGGAATTGTGGCCAGGAACTTGTGTGGTTGA 1179 0.4665 MGNEGIMKGVTKLRVNPGKATILALGKAFPHQLVMQEYLVDGYFRDTNCDNPELKQKLTRLCKTTTVKTRYVVMSEDILNKYPELAAEGIPTVKQRLEICNEAVTEMAIEASQACIKNWGGSLSDITHLVYVSSSEARLPGGDLYLAKGLGLSPDTQRIMLYFAGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSADRPYDLVGVALFGDGAGAMIIGSDPVLETERPLFELHTAVQEFLPHTEKKIDGRLTEEGISFKLARELPQIIEDNVKGFCDKLMSVVGFQNQEYNKLFWAVHPGGPAILNRIEKRLDLLPEKLSASRRALMDYGNASSNTIVYVLEYMIEEGVKIRKDGREDPEWGLILAFGPGITFEGIVARNLCG 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3058 392 Gene3D - 4 237 IPR016039 GO:0016746
Ssu3g3058 392 Pfam Chalcone and stilbene synthases, C-terminal domain 240 390 IPR012328 -
Ssu3g3058 392 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 13 390 IPR011141 GO:0009058|GO:0016747
Ssu3g3058 392 Pfam Chalcone and stilbene synthases, N-terminal domain 11 230 IPR001099 -
Ssu3g3058 392 Gene3D - 238 391 IPR016039 GO:0016746
Ssu3g3058 392 PIRSF PKS_III 7 391 IPR011141 GO:0009058|GO:0016747
Ssu3g3058 392 SUPERFAMILY Thiolase-like 13 233 IPR016039 GO:0016746
Ssu3g3058 392 CDD CHS_like 20 386 - -
Ssu3g3058 392 PANTHER TYPE III POLYKETIDE SYNTHASE B 13 390 - -
Ssu3g3058 392 SUPERFAMILY Thiolase-like 237 388 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3058 Ssu-Chr3 86082277 86083833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3058 88 377 Miscellaneous Gene Families AT4G34250 25.234 2.02e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3058 - - vun:114168705 725.702