Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3057 ATGAGACCTCAGAGAACGTCGATCCACGCCGTCACGACATGGGTGAGGCGACAGCCCCCAAAGGTGAAGGCTTTTCTCGCCGTCGTTTCCGGCATGGCGGCTCTCGTCGTCCTTCGCTTCATCGTTCACGATCACGACAATCTCTTCGTCGCTGCCGAGGCTGTCCACTCCCTCGGAATTTCCGTCCTCATCTATAAGCTCATGAAGGAGAAGACCTGTGCTGGGTTATCACTCAAATCTCAGGAATTAACAGCTATCTTTTTAGCTGTTAGGCTGTACTGCAGTTTTGTCATGGAATATGATATACACACCATACTTGATTTCGCTACTTTCATAACGACACTGTGGGTTATATATATGATTCGTTTTAAGCTCAAGGCTAGTTACATGGTGGAGAAGGATAACTTTGCAATATACTATGTGGTGGTACCCTGTGCTGTGCTAGCCTTGCTTATTCATCCATCAACTTCTCATCATATATTAAACAGGATTTTCTGGGCATTCTGTGTATATCTGGAAGCCGTCTCAGTCCTACCCCAACTTCGGGTCATGCAGAACACCAAGATTGTTGAGCCATTCACAGCTCATTATGTATTTGCACTGGGTGTCGCAAGATTCTTGAGCTGTGCTCATTGGGTTCTTCAGGTGTTAGATAGCCGTGGGCACTTGTTGGTAGCCTTGGGGTATGGCTTGTGGCCATCAATGGTTCTTATCTCAGAAATTGTCCAGACCTTCATCTTAGCAGATTTCTGTTACTATTATGTCAAAAGTGTTTTCGGGGGACAGCTTGTTCTACGGCTTCCCTCTGGAGTGGTGTGA 819 0.4652 MRPQRTSIHAVTTWVRRQPPKVKAFLAVVSGMAALVVLRFIVHDHDNLFVAAEAVHSLGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHTILDFATFITTLWVIYMIRFKLKASYMVEKDNFAIYYVVVPCAVLALLIHPSTSHHILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLPSGVV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3057 272 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 1 271 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu3g3057 272 PRINTS ER lumen protein retaining receptor signature 75 95 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu3g3057 272 PRINTS ER lumen protein retaining receptor signature 166 186 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu3g3057 272 PRINTS ER lumen protein retaining receptor signature 188 202 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu3g3057 272 PRINTS ER lumen protein retaining receptor signature 202 220 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu3g3057 272 PRINTS ER lumen protein retaining receptor signature 48 67 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu3g3057 272 Pfam ER lumen protein retaining receptor 72 214 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu3g3057 272 PANTHER ER LUMEN PROTEIN-RETAINING RECEPTOR C28H8.4-RELATED 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3057 Ssu-Chr3 86078196 86080889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3057 5 272 Miscellaneous Gene Families AT2G21190 88.433 3.95e-179 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3057 - - gmx:100803652 533.872