Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3043 ATGACTCGACCTTACGGTGTGAAGGGGCGGAAGCGAAAGCACGCCGAACCCAAATACGACGCTGAATATGAAGAAGACGTACAAGCGCAACCAAAGAAAGCTGTGGTTGAAAACGACGAACCAACACCGGCACCAGCATCGGAACCAACCCCAGCCGAGGAGTATGAATTGAGCGGTATCCCAATTGCGCCGAGTGAGAAGAACAGTTCCAAACCCAGCGTCATCTTCATTCTCGAAAAAGCTTCTTTGGAAGTCGCCAAAGTCGGCAAGACGTATCAGCTCTTGAACTCGGACGACCATGCCAATTTCCTCcgcaaaaataacaagaatccCGGAGATTACAGGCCCGACATTACACATCAGTCCCTTCTATCTATTTTAGATAGCCCGCTAAATAAAGCTGGGAGATTGAGAACAGTATACATAAAGACTGAAAAAGGTGTTCTTATAGAGGTTAAGCCCTTTGTTCGTATTCCAAGAACATTCAAACGCTTTGCTGGTGTCATGTTGGAACTGCTTCAAAAATTGAGCATATCTGCTGTTGGCAAGCGCGAGAAACTTCTCCGCACCGTCAAAAACCCTGTCACGCAGTATTTGCCTGTCAACTCACGAAAAATAGGTCTATCATATAGTTCAGAAAAGCTTGTAGATATGGATGACTACGTATCAACTGTTTCCAACAATATGGACCTTGTCTTTGTGGTAGGAGCAATGGCCCATGGGAAGATTGAGACAGATTATACAGAAGATTATATAGCAATTTCGGGGTACCCTCTAAGTGCTGCTTATTGTATTGCAAGGATTACTGGCGCCCTTGAGAGAAAGTGGAAGATATTGTGA 840 0.4417 MTRPYGVKGRKRKHAEPKYDAEYEEDVQAQPKKAVVENDEPTPAPASEPTPAEEYELSGIPIAPSEKNSSKPSVIFILEKASLEVAKVGKTYQLLNSDDHANFLRKNNKNPGDYRPDITHQSLLSILDSPLNKAGRLRTVYIKTEKGVLIEVKPFVRIPRTFKRFAGVMLELLQKLSISAVGKREKLLRTVKNPVTQYLPVNSRKIGLSYSSEKLVDMDDYVSTVSNNMDLVFVVGAMAHGKIETDYTEDYIAISGYPLSAAYCIARITGALERKWKIL 279
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3043 279 SUPERFAMILY alpha/beta knot 63 278 IPR029028 -
Ssu3g3043 279 PANTHER NEP1/MRA1 26 278 IPR005304 GO:0070037|GO:0070475
Ssu3g3043 279 MobiDBLite consensus disorder prediction 13 33 - -
Ssu3g3043 279 CDD Nep1-like 74 273 IPR005304 GO:0070037|GO:0070475
Ssu3g3043 279 MobiDBLite consensus disorder prediction 1 54 - -
Ssu3g3043 279 Gene3D - 74 279 IPR029026 -
Ssu3g3043 279 Pfam EMG1/NEP1 methyltransferase 76 273 IPR005304 GO:0070037|GO:0070475
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu3g3043 Ssu-Chr3 85912967 85915229 Dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3043 K14568 - gmx:100788480 474.552