Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3042 ATGGTCCAACCGGCGGTGACCCAGTTCCTGAGCTCCGTCCTTTCCCAGCGCGGCCCGTCCGCGGTCCCGTACGCGGAGGACACGAAGTGGCTGATCCGGCAGCACCTGGTGGCTCTGACCACCACGTTCCCTTCTCTGGAGCCGAAAACGGCGTCGTTCACCCACAACGACGGCCGTTCCGTGAACCTCCTCCAAGCGGAGGGCACAATCCCCATGACCTTCCAAGGCGTGACCTACAACATCCCGGTCGTGATCTGGCTGATGGAGTCGTACCCCCGCCACCCGCCGTGCGTCTACGTGAACCCCACGCGCGACATGATCATCAAACGCCCCCACGCTCACGTTAACCCTTCCGGCTTGGTCTCCGTCCCTTACTTGCAGAATTGGACCTACCCCGGTTCCAACCTCGTCGATCTCGTTCTCTCTCTCAGCCTCGTCTTCGGCCGCGACCCTCCCCTCTATTCCCAGCGCAGAACTACccctaaccctaaccctaaccctaaTCCCCATCCTCCTCCCAATTTCGgaacctcttcctcttcttcttcttcatctggCTACCCCCACGCCCACCCTCCTCCTAGGAGTTATCCTCCTTCCCCTTACCCTGCCCCTGCTCCTGCTCCTAGGGTTCACTCCACGGAGGACCCTTCTGAGGTGTTCAAGCGGAACGCGATTAACAAGCTTGTGGAGGTGGTGCACGGCGATGTTGCCGCGTTGAGGAAGACCCGGGAGGGTGAAATGGAGGGGCTGTTCACTTTGCAGGGGGTGCTGAAGCAGCGCGAGGAGACTCTCAACAAGGGCTTGACGGAGATGCAGGAGGAGATGGAGGCGCTGGAGCAGCAACTCCAGATTGTGTTGATGAACACTGATGTTTTGGAGGGGTGGCTGAGGGACAACCAGGGGAAGAAGATGTTGGGGGGTTTGGATTTGGAGAGCCCTGAGGATGCTTTTGAGTGTGTGGATGTGCTCTCCAAGCAGATGCTTGAGTGCACTGCTGCTGATCTGGCTATTGAGGACACCCTTTATGCCTCGGACAAGGCGCTTCAGGTCGGGGCGCTGCCGTTTGATCAGTACTTGAGGAGTGTGAGGGCGCTGTCCAGGGAGCAGTTCTTCCACCGCGCCACTGCCACCAAAGTTAGGGCCGCTCAGTTGCAGGCTCAGGTTGCCAGTATGGCTGCCCGGACTCAGCATTATGGTACCTGA 1206 0.5713 MVQPAVTQFLSSVLSQRGPSAVPYAEDTKWLIRQHLVALTTTFPSLEPKTASFTHNDGRSVNLLQAEGTIPMTFQGVTYNIPVVIWLMESYPRHPPCVYVNPTRDMIIKRPHAHVNPSGLVSVPYLQNWTYPGSNLVDLVLSLSLVFGRDPPLYSQRRTTPNPNPNPNPHPPPNFGTSSSSSSSSGYPHAHPPPRSYPPSPYPAPAPAPRVHSTEDPSEVFKRNAINKLVEVVHGDVAALRKTREGEMEGLFTLQGVLKQREETLNKGLTEMQEEMEALEQQLQIVLMNTDVLEGWLRDNQGKKMLGGLDLESPEDAFECVDVLSKQMLECTAADLAIEDTLYASDKALQVGALPFDQYLRSVRALSREQFFHRATATKVRAAQLQAQVASMAARTQHYGT 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3042 401 Pfam Vps23 core domain 317 379 IPR017916 -
Ssu3g3042 401 PANTHER PROTEIN ELC 6 396 - -
Ssu3g3042 401 Coils Coil 262 289 - -
Ssu3g3042 401 MobiDBLite consensus disorder prediction 191 210 - -
Ssu3g3042 401 ProSiteProfiles UEV domain profile. 13 157 IPR008883 GO:0015031|GO:0036211
Ssu3g3042 401 Pfam UEV domain 33 153 IPR008883 GO:0015031|GO:0036211
Ssu3g3042 401 SUPERFAMILY Endosomal sorting complex assembly domain 322 382 IPR037202 -
Ssu3g3042 401 MobiDBLite consensus disorder prediction 175 189 - -
Ssu3g3042 401 Gene3D Ubiquitin Conjugating Enzyme 1 154 IPR016135 -
Ssu3g3042 401 Gene3D - 323 383 - -
Ssu3g3042 401 SUPERFAMILY UBC-like 16 153 IPR016135 -
Ssu3g3042 401 MobiDBLite consensus disorder prediction 154 217 - -
Ssu3g3042 401 PANTHER TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED 6 396 - -
Ssu3g3042 401 ProSiteProfiles Steadiness box (SB) domain profile. 322 390 IPR017916 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3042 K12183 - gmx:100778834 627.476