Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3039 ATGGCCTCAACCACTCTAACAACCCTCACCCTCCGCTCCCTATCTTATCCTACACCCTCCTCTTACCCTGCGCACCACCCCTCCGTCAAACCCTCCCTCCCATTCCCCAGCCTCTCCCGGCGTGCCGCCACGCGCCGCGGCCGCGTGGTCGCCGCCGTCGCCGCTCCGGAGAAGATCACGAAGCTCGGCGACGAAATCGCCGGACTCACCCTCGAGGAGGCGAAGAGCCTGGTGGACTTTCTCCAGGACAAGCTCGGCGTCTCGGCGGCGGCGTTCGCCCCCGTGGCCGCTGTCGCCGCCCCCGGAGCTGCGGCGGCGGACGCTCCGGCGGTGGTGGAGGAGAAGACGGAGTTCGACGTGGTGATCGAGGACGTGCCGAGCAACGTGAGAATCGCGGTGATCAAGACGGTGAGAGCGTTGACGAGTCTGGCGCTGAAGGAGGCGAAGGAGTTGATCGAAGGGTTGCCGAAGAAGTTCAAGGAAGGGGTTTCCAAGGAAGAAGCCGAAGACGCCAAGAAGCAACTCGAAGAAGCTGGTGCCAAGATTGCCATTGTTTAG 558 0.638 MASTTLTTLTLRSLSYPTPSSYPAHHPSVKPSLPFPSLSRRAATRRGRVVAAVAAPEKITKLGDEIAGLTLEEAKSLVDFLQDKLGVSAAAFAPVAAVAAPGAAAADAPAVVEEKTEFDVVIEDVPSNVRIAVIKTVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKIAIV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3039 185 Hamap 50S ribosomal protein L7/L12 [rplL]. 54 185 IPR000206 GO:0003735|GO:0005840|GO:0006412
Ssu3g3039 185 TIGRFAM L12: ribosomal protein bL12 60 184 IPR000206 GO:0003735|GO:0005840|GO:0006412
Ssu3g3039 185 Pfam Ribosomal protein L7/L12 C-terminal domain 118 184 IPR013823 GO:0003735|GO:0006412
Ssu3g3039 185 Pfam Ribosomal protein L7/L12 dimerisation domain 58 106 IPR008932 GO:0003735|GO:0005840|GO:0006412
Ssu3g3039 185 Gene3D Single helix bin 57 113 IPR036235 GO:0003735|GO:0005840|GO:0006412
Ssu3g3039 185 Gene3D - 114 184 IPR014719 -
Ssu3g3039 185 PANTHER 39S RIBOSOMAL PROTEIN L12 1 184 IPR000206 GO:0003735|GO:0005840|GO:0006412
Ssu3g3039 185 CDD Ribosomal_L7_L12 57 184 IPR000206 GO:0003735|GO:0005840|GO:0006412
Ssu3g3039 185 SUPERFAMILY ClpS-like 113 184 IPR014719 -
Ssu3g3039 185 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 58 120 IPR036235 GO:0003735|GO:0005840|GO:0006412
Ssu3g3039 185 PANTHER 50S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATED 1 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3039 Ssu-Chr3 85887244 85887801 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3039 K02935 - gmx:100779891 231.491