Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3036 ATGGAGGGAACAGGAACAGGAACAGCCACAGGGTGTTACAAGTGCGGCAGACCAGGTCACTGGTCACGGGACTGCCCTTTCTCTGCTCCCAATCCCGATCCAAACCCTAACAGCACCACCAATCCCAATCCTCCTTCCTCTTCTTTCAAGCCCAGATCCGCCGCCGACAAGCCCAAAAAGCTCCCCCGAACAAAGCCCAAACTCACTCCCGACCTTCTTCTCTCCGACGACGGCCTCGGTTATGTCCTTCGCTATTTCCCGAGCGAGTTCAAATACCGTGGTCGCGGCCACGAGGTTCGTGATTTGGGCAACCTGCTTCGGTTGTACACCGAATGGCACTCTCGCTTGCTCCCTTATTACtctttcaatcaatttattcaCAAAGTGGAGAAAGTTGCCGCTACCAGGCGTGTAAAGACTTGCCTTAGAGAATTGAGAGAAAGAGTTGCAAGTGGTGGAGATCCAACAAAACTGCGTGAACCACCAGTTATACATGATATTCCATCTGACGAACACGCTGTATCTGCAGAAAATGGGGGAGCAAGTCATCAAGAGACAGATGTGTTTGCAGAATCTGAAAATGTTAATGACATTCAGGAAGACATGcttaatgatatatatgataaagCTACTGAAGAACCTTCTCAGTCCATGCACGATGTGATTGGCACTAGCGTGGCTTCAGAAAGTAATGCAATTGAAAAGACATTAGAGGAAGTCCAAAATGATGGATCCAGCCAGTCTGGCAAATCTGGGATAACGGAAGAGCAGAGAGCTCGTATGGAAGCAAATAGGTTGAAGGCACTAGAAAGGCGTGCTGCTCGAGCCAGCTTATCACTGGCCTCCTAA 849 0.477 MEGTGTGTATGCYKCGRPGHWSRDCPFSAPNPDPNPNSTTNPNPPSSSFKPRSAADKPKKLPRTKPKLTPDLLLSDDGLGYVLRYFPSEFKYRGRGHEVRDLGNLLRLYTEWHSRLLPYYSFNQFIHKVEKVAATRRVKTCLRELRERVASGGDPTKLREPPVIHDIPSDEHAVSAENGGASHQETDVFAESENVNDIQEDMLNDIYDKATEEPSQSMHDVIGTSVASESNAIEKTLEEVQNDGSSQSGKSGITEEQRARMEANRLKALERRAARASLSLAS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3036 282 PANTHER TIMELESS-INTERACTING PROTEIN 8 276 - -
Ssu3g3036 282 MobiDBLite consensus disorder prediction 226 266 - -
Ssu3g3036 282 Gene3D - 6 53 - -
Ssu3g3036 282 Pfam Replication Fork Protection Component Swi3 67 148 IPR012923 GO:0005634|GO:0006974|GO:0048478
Ssu3g3036 282 PANTHER TIMELESS INTERACTING-RELATED 8 276 IPR040038 GO:0000076
Ssu3g3036 282 SMART c2hcfinal6 11 27 IPR001878 GO:0003676|GO:0008270
Ssu3g3036 282 MobiDBLite consensus disorder prediction 24 69 - -
Ssu3g3036 282 Coils Coil 266 282 - -
Ssu3g3036 282 Pfam Zinc knuckle 11 26 IPR001878 GO:0003676|GO:0008270
Ssu3g3036 282 MobiDBLite consensus disorder prediction 226 254 - -
Ssu3g3036 282 SUPERFAMILY Retrovirus zinc finger-like domains 8 28 IPR036875 GO:0003676|GO:0008270
Ssu3g3036 282 ProSiteProfiles Zinc finger CCHC-type profile. 12 26 IPR001878 GO:0003676|GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3036 K10904 - gmx:100808422 420.624