Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3034 ATGGAGATAAATTTGGGGAAACTTGCATTTGACATTGATTTTCACCCGTCAGATAATCTCGTCGTTGCGGGTCTAATTAACGGTGACCTTCACCTATACCGTTATAGCCCTGATAGCATCCCTGTGAGGGCTGCTCGATTCATCAATGGTGGACGTGCGCTATTGACAGGTTCTCCGGATTGCTCGATACTGGCTACTGATGTGGAAACTGGATCTACAATTGCCCGGCTTGATAATGCTCATGAAATTTGTATGTGGTTTTTTTGTGATGGCAGGGCTGCAGTCAATAGATTGATAAACTTGACCGAGTCAACTGTAGCTTCAGGAGATGATGAGGGTTGTATAAAgGTATGGGATACCAGAGAACGTTCTTGTTGCAATTCTTTTAATGCCCACGAAGATTACATTTCAGACATGACTTTTGCGTCTGATGCAATGAAACTGTTGGCAACAAGTGGAGATGGGACTCTGTCTGTTTGCAATCTTCGAAGAAATACAGTGCAAGCTCGATCTGAATTTTCTGAAGATGAGTTGCTGTCTGTTGTTTTAATGAAGAATGGTAGGAAAGTTGTATGCGGATCACAAACTGGAATCATTCTATTGTATTCATGGGGATGCTTCAAGGATTGTAGTGATCGATTTATTGGTCTCTCTTCGAACTCTATTGATGCTATGTTGAAGCTTGATGAAGATAGGATTATTACCGGATCAGAGAATGGGATTATCAACTTGGTTGGGATATTACCTAACAGAGTCATCCAGCCAATTGCAGAACACTCGGAGTATCCTGTTGAGGGTCTTGCATTCTCTCATGATAGGAAGTTCCTTGGAAGCATCGCTCATGATCAAATGTTAAAGCTATGGGACTTGGATAATATACTACAAGGTTCAAGAAACACAGAGAGAAATGAAGCTGGAGCGATTGACAGCGACGATGATGAGATGGATCTAGATGATGATCCTTCAAAGTTCAGTAAAGGGAACAAGAGAAAGAATGCAAATAATGGGCATGCCCTAGGCGGTTCGAACAACTTCTTTGCAGATTTATAG 1050 0.4171 MEINLGKLAFDIDFHPSDNLVVAGLINGDLHLYRYSPDSIPVRAARFINGGRALLTGSPDCSILATDVETGSTIARLDNAHEICMWFFCDGRAAVNRLINLTESTVASGDDEGCIKVWDTRERSCCNSFNAHEDYISDMTFASDAMKLLATSGDGTLSVCNLRRNTVQARSEFSEDELLSVVLMKNGRKVVCGSQTGIILLYSWGCFKDCSDRFIGLSSNSIDAMLKLDEDRIITGSENGIINLVGILPNRVIQPIAEHSEYPVEGLAFSHDRKFLGSIAHDQMLKLWDLDNILQGSRNTERNEAGAIDSDDDEMDLDDDPSKFSKGNKRKNANNGHALGGSNNFFADL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3034 349 Gene3D - 222 317 IPR015943 GO:0005515
Ssu3g3034 349 ProSitePatterns Trp-Asp (WD) repeats signature. 276 290 IPR019775 -
Ssu3g3034 349 Pfam WD domain, G-beta repeat 258 289 IPR001680 GO:0005515
Ssu3g3034 349 Gene3D - 8 221 IPR015943 GO:0005515
Ssu3g3034 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 292 IPR001680 GO:0005515
Ssu3g3034 349 PANTHER WD REPEAT-CONTAINING PROTEIN 55 8 327 - -
Ssu3g3034 349 SUPERFAMILY WD40 repeat-like 10 290 IPR036322 GO:0005515
Ssu3g3034 349 PANTHER WD REPEAT-CONTAINING PROTEIN 55 8 327 - -
Ssu3g3034 349 MobiDBLite consensus disorder prediction 300 337 - -
Ssu3g3034 349 SMART WD40_4 122 161 IPR001680 GO:0005515
Ssu3g3034 349 SMART WD40_4 249 289 IPR001680 GO:0005515
Ssu3g3034 349 SMART WD40_4 28 67 IPR001680 GO:0005515
Ssu3g3034 349 SMART WD40_4 81 119 IPR001680 GO:0005515
Ssu3g3034 349 SMART WD40_4 166 203 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3034 Ssu-Chr3 85834243 85838776 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3034 K24750 - gmx:100792826 615.15