Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3028 ATGGTGATAGAGCACTCCTCCCGAGGAGAGAGGGCATACGACATCTTCTCGCGCCTTCTCAAGGAGCGCATCATTTGCATCAACGGACCCGTCTCCGACGACACCGCTCACGTCGTCGTCGCGCAGCTCCTCTTCCTCGAATCCGAAAACCCTTCCAAACCCATCCACATGTACCTCAACTCCCCCGGTGGCGCCGTCACCGCAGGGCTCGCTATTTATGATACGATGCAGTATATTCGGTCTCCAGTCAATACAATCTGCTTGGGTCAAGCTGCATCCATGGGTTCTCTCTTATTGGCTGCGGGTGCCAAGGGTGAGAGGCGGTCTCTTCCAAATGCAACAATCATGATTCACCAGCCTTCTGGCGGTTATAGTGGCCAGGCAAAGGATGTTGCAATTCACACCAAGCAGATTGTTCGGATTTGGGATTCCTTGAATGAGTTGTATGCCAAGCATACTGGCCAGTCGGTTGAGGTTATTCAGACAAATATGGACAGGGATAACTTTATGACACCACAGGAGGCCAAGGAGTTTGGGATCATTGACGAGGTCATTGATCAGAGACCCATGGCTTTGGTTTCTGATGCTGTTGGTAACGAAGGCAAAGATAAAGGTTTGAACTAG 624 0.5096 MVIEHSSRGERAYDIFSRLLKERIICINGPVSDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGAVTAGLAIYDTMQYIRSPVNTICLGQAASMGSLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDVAIHTKQIVRIWDSLNELYAKHTGQSVEVIQTNMDRDNFMTPQEAKEFGIIDEVIDQRPMALVSDAVGNEGKDKGLN 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3028 207 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 1 188 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu3g3028 207 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1 206 IPR023562 -
Ssu3g3028 207 Pfam Clp protease 8 187 IPR023562 -
Ssu3g3028 207 ProSitePatterns Endopeptidase Clp serine active site. 85 96 IPR018215 -
Ssu3g3028 207 Gene3D - 1 193 - -
Ssu3g3028 207 ProSitePatterns Endopeptidase Clp histidine active site. 107 120 IPR033135 -
Ssu3g3028 207 PRINTS Clp protease catalytic subunit P signature 163 182 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu3g3028 207 PRINTS Clp protease catalytic subunit P signature 54 74 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu3g3028 207 PRINTS Clp protease catalytic subunit P signature 85 102 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu3g3028 207 PRINTS Clp protease catalytic subunit P signature 14 29 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu3g3028 207 PRINTS Clp protease catalytic subunit P signature 106 125 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu3g3028 207 CDD S14_ClpP_2 14 184 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu3g3028 207 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1 206 - -
Ssu3g3028 207 SUPERFAMILY ClpP/crotonase 6 189 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3028 Ssu-Chr3 85755327 85756484 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3028 K01358 - gmx:100782585 397.897