Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3027 ATGGCTCCCGGGCGTCGACGCGGAGCGAACAAGGTGAAGGCCAATGGCCACTTGAGTTTGGGTGATCTCGTGCTCGCTAAGGTCAAGGGCTTCCCCGCTTGGCCTGCTAAGATAAGCAGGCCTGAAGATTGGGGGAAAACTCCTGATCCGAAGAAATATTTTGTTCAATTCTTTGGTACAAAAGAAATAGCTTTTGTTGCCCCAGCAGATATTCAGGCATTTACCAGCGAGGCTAAAATTAAGTTGTCTGCTCGGCTTCAAGGCAAGACAAAGTACTTTGCCCAAGCTGTGAAGGAAATATGTACAGCATTTGATGAGATGCAGAAACAGAAGGCTAGTGGTTTGACAGACGACACTGATGATTCTCGTGTTGGTTCAGAGGCTCCATCTAATGATGGGGTGGTCAGTAACCTAAAGGATGCTACTGATGCTGTGGTATCAAAGGCAGAAAAAGATAACATTGATATAGGTAATGTTGGCTCTAATTTGGAGCACTGTATGCAGAGAATAGGAGAAAATGATAGCCAAGATGAAAAGCTCTCTGTATCTGACCATCCAAATGAAAGTTCTTCTGTTTCATCACCCGTGATGAAAAGTAAATTATCCATTGGTTCAGAGCCAAAGAAGAATGCTAACAAATCTAGTCTTAAAGGTGCTGCTAATGTTAATGATTTTGGGCAAGATAATAATGGACATAATGATTTAACAAACGGAAGCAAGCCAAGAAAGCTTGTTAATGGCTCAAGGAAGAGAAGTGAAGCTGCAGGTGATAGAGATAGAAATGGTGGCTCATCTGCTGGAACATTTTTGAAGGAGGGAAATTGTACTGGCAGTGGTGATCTTTCTAGGTCTGGAAAGACATTGAAAGctgggaaaaaaaagaaaaatgcattaGCTGTTAAATCAGATTCTCCAGATAATCTTAAATCAGATCATAATGGTAATACTGGGGAAAAAGATAGCAACGTGATAAAAGTCAAAACAAGTGTTGAGGTAAAAAATGAGTTTCAGGAGATCTCCTTTGATTCCGAGGATGCTGATGGCAAAAGTTCTAGTATGTGGAAGAAGACCCAACTTCATGCAAAGCATAATGTAATTGTAGGAGCAAATGAATCTTTACGTGCTTCAAAGAAGTTGAAGTGTACGGATGCTAAAGATGATTCAACTTTAGGATATCCTTCAAAAGATCTGAAAAGAGCTTCACCTGGCTCTATGGTTATTGAAGACAGACCATTTAAACAATTAGAATTGAAGAAGTCTACACCAAatttgaaaacagaaaaaagcTTGCCATCAAGGGGTCAAATTGGTGGTGCAGGTTCTGATGATTCTGTCCATGAGTTGCTACCTGGGACTAAACATCATAGCCAGGTTCAGCAAGTTATGCCTGATTCTTCTGGCATTGCTTctgatgaaaagaaagaaaggagttCTCTTAGACTGAAAGGTGATACAAATAATGTTATGATAAAACAAGTAGAGAGGAAACGTAGAGCTGTTTGCCTttttgatggtgatgatgatgatgaaccTAAAACTCCTGTTCATGGAGGAGctgcaaaaaatattaaagcatCTTCTGTTTCAGAGGTCAAGAAGAGCAACAATGCACACTCAGAGAAGTCTGATGTTGCTCAGCTGGCTCAAAGAAATTTTAGTGAACTTGAGGATACCCATTTGAAAGAGCCATCTTCTCAATTACATAATGACAGTTTGTTAATTAAGCAGcctctaaaagaaaaagatgacgAAACAATTCCTGTGCATGTTCCTCATAGTCCtgaaaaattagatttgaagCAGTTTCTCTCTACCGTGGCTAAACTAAGCTCTGTCTCTCCACTAAAATCACCTCAGTCGTTACCTGCAACAAAGTCAAATGCTGAGCGGAATAAAGCTTCCAAACTGTCACTTAAAGTTTCCAGTAATGCTACTCAAAAGAGGGCTGATCATGGGTCTTCAAAGTCTTCCCATAACCTTGGCTCTTCTCAGAATCAAGTTGCAACTCATAAAAAGAAGTTTGCATCTTCTGCAGAAATTTCTAAAACTACCCCAAAGACATTGCCGCAGGCCGTTGAAGTTCCTGCTTCAACAGTTGGTTTTAAGGATCCTGATGCTCTACATGTTGATAGaTTGGAGGTGGGCATTGATgagaaaaatagtatatatactGGTTCTGGGACTCCTGAAAATGCTAAAACTATGAGGCATCTTATTGCGGCTGCCCGGGCAAAAAGGACACAAGCTCATTTGCAATGTCTTCCTTCTGGCTTTCCCAATGTTCAGGGGGGGACTCCTAGCCCCTCCACAGTTCAGCCATTTTTGCCTGTCTTGAGCAATTTTGTGCAGGCAGATATGCAGGGAGTTTATGAGCACACAACATTGGCTTCTCCACTAACTAAAGAGCATCACTCTACTCTTGAGAGAAGAGCTGGTTCAGCACAAAGGGGTCCAGGAGGCTCACTGAGTGGTGGTACTGAGGCTGCTGTTGCTCGTGAAGCTTTTGAAGGAATGATTGAAACATTGTCAAGGACCAAGGAAAGCATTGGCCGTGCAACTCGCCTTGCCATTGATTGTGCCAAGTATGGCATTGCCAACGAGGTTGTTGAACTTCTCATCCGAAAGCTGGAAAATGAAACTAGTTTTCATCGCAAAGTGgatttgttttttcttgttGATTCTATCACTCAGTGCTCATATAATCAAAAGAGGAATTTTTTAGGCATTGCAGGAGCCTCCTACATCCCTACTGTTCAGGCAGCGTTGCCACGTCTTCTTGGTGCTGCTGCTCCCCCTGGTGCTAGTGCCCGTGAAAATCGTCGTCAGTGTCTCAAGGTTTTGAGGCTGTGGCTTGAGAGGAAAATTTTGCCTGAATCAGTTCTTCGCCGTTACATGGATGATATTGGAGTTTCAAATGATGATATGACAGTTAGCTTTTCTCTCAGACGTCCATCTCGAGCAGAGCGAGCTGTGGATGACCCAATTAGAGAAATGGAAGGCATGCTTGTAGATGAGTATGGAAGTAATGCTACATTTCAGCTGCCTGGCTTTTTATCTTCACATGCatttgaagaagatgaagatgaagatgaagatgatatACCAATCAATTTGTGTAAGGAGACATGTGATGCATCTCCAGCAGATCCCACACATACCCTTGGAGAATCAGAAACTTCTACTGTTACCCCAAATGACAAGCGCCATTGTATCTTAAAGGATGTGGATGGTGAGCTGGAAATGGAAGATGTTTCAGGTCACCCAAAGGATGAAAGGCCCGTATTTTTTAACAGTTCTAGTGAAATTGATTTGCAACTTCAGGGCTCGGATAGGAATTTAGATCTAACTCCAAATATTTCAGAAGAGATGTCAGCTACTCCAGAGGGTTCTCCTCCTTTGCCACTTGATTCACCTCCTCCACCCCCACCTTTACCTTCGTCACCTCTGCCACCTCCTCCTCCATTATCTCCATCTCCTCCCCCACCTCCCCCACCTCCAATGTTGCAACCCCCACCTCCTCCTTTACCACTATCAGCCCCTCCGGTGTCATTGGTTCCTCAGTCGTCTGGACCAGCTCGGCCACTTCTCTCCCAGTCATTAATGCCACCTCAGTCATCACATCAGTCGTCTCCACAGTTGGGGTATCAGCAGAGTGTACCTCATGACTTTAGTGGCACTACTAATGGTAACCAAATAGTTCCAATGGCTGGAAATTCTTTTCCTGGAGGTCACAGTAATGCAATTGTCAAGAAGGAGGTATTTCCACAGCCATCAGCTTTTGCTCCAACAGCAGGCTGCAGCTCCCAGGAACCTTCTGGTTTTAACCCTTCAAGGCAATTTGAATACGGACAAAATGATATGTATCTAAATGCTCAAGCTCCTCAACCTAACCATCAATTTCAGCAGGGTAATCCCCCATTTGCTCAGAGGCATGCACATTCTGCCCCACCCCAAAATCCACCAAATCCGTACTCATATCCAAATCCTACAGTTCAGCAACATCTTCCACATTCATTTCATCCTCCCTTCCCCTTACCATCCCTTCCAGATGGCCGGAGACAATTTGTTGCTGATGAACAATGGAGAGTGTCATCTAGtgaatttaaaacaaacaatcaaCATGGTGTATGGAGAGGGAGAAATCCTTCATGTCCTGGTCCACCCTATGGGCAAGAAGGTCATTTTCGGCCATCACTTGAAAGGCCACCAGTAAGCACTGTAGGATTTCAGCGCCCAATTTCAAGCAACCTACCTGTTGCTCCAATATCTGGACACGGTGTACCTCAGATGATGCCCTGTAGGCCAGACATTCCTGCTGTTAATTGTTGGAGACCCACTTGA 4341 0.417 MAPGRRRGANKVKANGHLSLGDLVLAKVKGFPAWPAKISRPEDWGKTPDPKKYFVQFFGTKEIAFVAPADIQAFTSEAKIKLSARLQGKTKYFAQAVKEICTAFDEMQKQKASGLTDDTDDSRVGSEAPSNDGVVSNLKDATDAVVSKAEKDNIDIGNVGSNLEHCMQRIGENDSQDEKLSVSDHPNESSSVSSPVMKSKLSIGSEPKKNANKSSLKGAANVNDFGQDNNGHNDLTNGSKPRKLVNGSRKRSEAAGDRDRNGGSSAGTFLKEGNCTGSGDLSRSGKTLKAGKKKKNALAVKSDSPDNLKSDHNGNTGEKDSNVIKVKTSVEVKNEFQEISFDSEDADGKSSSMWKKTQLHAKHNVIVGANESLRASKKLKCTDAKDDSTLGYPSKDLKRASPGSMVIEDRPFKQLELKKSTPNLKTEKSLPSRGQIGGAGSDDSVHELLPGTKHHSQVQQVMPDSSGIASDEKKERSSLRLKGDTNNVMIKQVERKRRAVCLFDGDDDDEPKTPVHGGAAKNIKASSVSEVKKSNNAHSEKSDVAQLAQRNFSELEDTHLKEPSSQLHNDSLLIKQPLKEKDDETIPVHVPHSPEKLDLKQFLSTVAKLSSVSPLKSPQSLPATKSNAERNKASKLSLKVSSNATQKRADHGSSKSSHNLGSSQNQVATHKKKFASSAEISKTTPKTLPQAVEVPASTVGFKDPDALHVDRLEVGIDEKNSIYTGSGTPENAKTMRHLIAAARAKRTQAHLQCLPSGFPNVQGGTPSPSTVQPFLPVLSNFVQADMQGVYEHTTLASPLTKEHHSTLERRAGSAQRGPGGSLSGGTEAAVAREAFEGMIETLSRTKESIGRATRLAIDCAKYGIANEVVELLIRKLENETSFHRKVDLFFLVDSITQCSYNQKRNFLGIAGASYIPTVQAALPRLLGAAAPPGASARENRRQCLKVLRLWLERKILPESVLRRYMDDIGVSNDDMTVSFSLRRPSRAERAVDDPIREMEGMLVDEYGSNATFQLPGFLSSHAFEEDEDEDEDDIPINLCKETCDASPADPTHTLGESETSTVTPNDKRHCILKDVDGELEMEDVSGHPKDERPVFFNSSSEIDLQLQGSDRNLDLTPNISEEMSATPEGSPPLPLDSPPPPPPLPSSPLPPPPPLSPSPPPPPPPPMLQPPPPPLPLSAPPVSLVPQSSGPARPLLSQSLMPPQSSHQSSPQLGYQQSVPHDFSGTTNGNQIVPMAGNSFPGGHSNAIVKKEVFPQPSAFAPTAGCSSQEPSGFNPSRQFEYGQNDMYLNAQAPQPNHQFQQGNPPFAQRHAHSAPPQNPPNPYSYPNPTVQQHLPHSFHPPFPLPSLPDGRRQFVADEQWRVSSSEFKTNNQHGVWRGRNPSCPGPPYGQEGHFRPSLERPPVSTVGFQRPISSNLPVAPISGHGVPQMMPCRPDIPAVNCWRPT 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3027 1446 MobiDBLite consensus disorder prediction 1182 1235 - -
Ssu3g3027 1446 SUPERFAMILY Tudor/PWWP/MBT 11 110 - -
Ssu3g3027 1446 MobiDBLite consensus disorder prediction 296 318 - -
Ssu3g3027 1446 MobiDBLite consensus disorder prediction 1121 1238 - -
Ssu3g3027 1446 MobiDBLite consensus disorder prediction 1042 1068 - -
Ssu3g3027 1446 MobiDBLite consensus disorder prediction 1131 1181 - -
Ssu3g3027 1446 MobiDBLite consensus disorder prediction 1052 1066 - -
Ssu3g3027 1446 Gene3D - 826 975 IPR008942 -
Ssu3g3027 1446 MobiDBLite consensus disorder prediction 798 826 - -
Ssu3g3027 1446 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 1 1446 - -
Ssu3g3027 1446 Gene3D - 10 114 - -
Ssu3g3027 1446 MobiDBLite consensus disorder prediction 416 485 - -
Ssu3g3027 1446 SMART PWWP_4 18 75 IPR000313 -
Ssu3g3027 1446 MobiDBLite consensus disorder prediction 185 243 - -
Ssu3g3027 1446 Pfam CID domain 833 962 IPR006569 -
Ssu3g3027 1446 MobiDBLite consensus disorder prediction 112 138 - -
Ssu3g3027 1446 MobiDBLite consensus disorder prediction 1295 1333 - -
Ssu3g3027 1446 MobiDBLite consensus disorder prediction 173 323 - -
Ssu3g3027 1446 CDD HDGF_related 18 103 IPR035496 -
Ssu3g3027 1446 ProSiteProfiles PWWP domain profile. 20 77 IPR000313 -
Ssu3g3027 1446 PANTHER PROTEIN HUA2-LIKE 1 1 1446 - -
Ssu3g3027 1446 MobiDBLite consensus disorder prediction 267 283 - -
Ssu3g3027 1446 Pfam PWWP domain 21 104 IPR000313 -
Ssu3g3027 1446 MobiDBLite consensus disorder prediction 611 682 - -
Ssu3g3027 1446 ProSiteProfiles CID domain profile. 827 972 IPR006569 -
Ssu3g3027 1446 MobiDBLite consensus disorder prediction 504 570 - -
Ssu3g3027 1446 SMART 558neu5 834 969 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3027 Ssu-Chr3 85726592 85745288 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3027 - - ccaj:109798832 1839.7