Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3024 ATGGCGACTCTGCAATTCACGTTCACCGACTCAACCTCCTTGTTCAGGCCTTCTTCACCTTCCTCGCGAACCTTCTCTCGAAATCGAAGCTTCGTCGTCaaagcttcttcttcttcttccgtCGACTTCTCCAGAAGCAGGAGACGCTTCCTCGCCGAAACCGCCGCAATCTCGGTGTCCCTCCCTCAGCCGGCGGCGAGGGCCGAAGAAGTGCTTTCGGAGTGGGAGAGAGTGTACCTCCCTATAGACCCCGGCGTCGTGCTTCTCGACATCGCTTTTGTCCCCGACGACCCCAACCACGGTTTTCTTCTCGGGACGAGGCAAACAATTCTGGAGACGAAAGATGGAGGAAACACTTGGGCTCCGCGTTCGATACCCTCTGCTGAAGACGAAGATTTCAACTATCGGTTCAATTCTATTAGCTTCAAGGGGAAGGAAGGGTGGATAGTCGGAAAACCTGCGATTCTGTTGTACACTGCTGATGCCGGAGAAAGTTGGGGGAGGATTCCTCTCAGTGCTGAACTTCCAGGGGATATTGTGTACATAAAGGCTACTGGTGAGAAGAGTGCAGAGATGGTGACTGACCAAGGTGCAATATATGTTACTGCTAACAGAGGTTACAATTGGAGGGCTGCTGTCCAGGAAACTGTGTCAGCTACTCTTAACAGAACAGTTTCGAGTGGTATTAGTGGTGCAAGCTACTACACTGGGACTTTCAATACTGTCAATCGCTCTCCAGATGGAAGGTATGTCGCAGTCTCAAGTCGGGGCAACTTCTACTTAACCTGGGAGCCTGGTCAGccATTCTGGCAGCCACATAATAGAGCAGTTGCCAGAAGAATCCAGAGCATGGGATGGAGAGCTGATGGTGGTCTATGGCTTCTTGTTCGTGGAGGTGGTCTTTATCTCAGCAAGGGCACTGGGTTAACTGAAGACTTTGAGGAGGTTCCTGTTCAAAGCCGGGGTTTTGGCATTCTTGATGTGGGATATCGTTCAACGGAGGAGGCTTGGGCAGCAGGAGGAAGTGGTATTCTCTTGAGAACTACTAATGGTGGCAAGTCATGGATCCGCGACAAAGCTGCCGACAACATTGCTGCAAATTTATACTCAGTGAAGTCAGTCTAA 1125 0.4987 MATLQFTFTDSTSLFRPSSPSSRTFSRNRSFVVKASSSSSVDFSRSRRRFLAETAAISVSLPQPAARAEEVLSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILETKDGGNTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTADAGESWGRIPLSAELPGDIVYIKATGEKSAEMVTDQGAIYVTANRGYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQSMGWRADGGLWLLVRGGGLYLSKGTGLTEDFEEVPVQSRGFGILDVGYRSTEEAWAAGGSGILLRTTNGGKSWIRDKAADNIAANLYSVKSV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3024 374 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 41 373 - -
Ssu3g3024 374 Gene3D - 134 370 IPR015943 GO:0005515
Ssu3g3024 374 Pfam Photosynthesis system II assembly factor YCF48 71 372 IPR028203 -
Ssu3g3024 374 SUPERFAMILY Oligoxyloglucan reducing end-specific cellobiohydrolase 74 359 - -
Ssu3g3024 374 PIRSF Photosystem_II_Ycf48-like 36 374 IPR016705 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3024 - - gmx:100810566 696.812