Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3019 ATGAAGAACCTGAACATCACTTTGTGCTTGCTTCTCATAGCTCTTGTGCGCTTAGGGGGAAGTGCACCCTCGGGCTTCAACTATGGTGATGCCATTGACAAGAGCTTGATGTTCTTTGAAGCACAAAGGTCTGGTAAGTTACCACTGCAGCAACGAGTCAAGTGGCGTGGTGATTCTGGTCTCCAAGATGGTTTTCAGCAAGGAGTAGACCTGGTGGGTGGGTATTATGATGCAGGAGATCATGTGAAATTTGGGTTGCCAATGGCCTACAGTGTCGCAATGCTTGCGTGGGGAGCCATTGAGTTCAGCAAGGAAATCACGGACTTGAACCAAATGGGACACTCATTAGGGGCAATTAAATGGGGAACCGACTACTTTATCAAAGCACACACTCAGCCTAATGTTCTTTGGGGACAGGTGGGTGATGGAGTTTCTGATCATTACTGCTGGGAGCGTGCTGAAGACATGACGACTTCAAGAGGTGCCTACAAAATTGATGAACAACACCCTGGCTCAGATCTGGCAGGTGAAACTGCGGCTGCATTGGCTGCTGCAGCCATAGCTTTCAGGCCCTACAACTCCTCTTACTCTAATCTCCTGCTAGTTCATGCAAAACAGCTCTTCACATTCGCAGATAGGTTCAGAGGTCTCTATGATGACTCCATATCAAGTGCTCAGCAATTCTATACTTCTTCCGGTTACTCGGATGAATTGTTGTGGGCTGCTACCTGGATGCACCTAGCAACTGGTGATGAATACTACCTAAAGTATGTAGTGGACAATGCTGTGTATATGGGAGGAACTGGCTGGGCAGTGAAAGAGTTCTCTTGGGACAACAAATATGCTGGTGTGCAGATCCTCCTATCAAAGGTATTACTGGAAGGAAAGGCTGGTCCTTACGCTGCTACACTAAAGCAATACCAGGCCAAGGCAGATTATTTTGCCTGCGCCTGCTTGCAAAAGAATGATGGTTACAATGTCCAGAAAACTCGAGGTGGCTTACTGTACGTGCGTGAATGGAACAACATGCAGTATGTTTCTTCTGCTACATTTCTTTTAGCTGTTTACTCTAATTATCTCTCAGCGACGAAAGCACAGCTCAGCTGTCCAGATGGACAAATTCAGCCTCAGGAGCTCCTCAATTTTGTTAAGTCACAGGCTGACTATATCCTTGGTGAAAACCCAGCGGATATGAGCTACTTGGTTGGATATGGACAAAAATATCCTGTTCATGTTCACCACAGAGGTGCTTCCATTGCTTCAATCTTTGCTCTTCACTATGAGGTTGGCTGCACCCAAGGATTTGAGATGTGGTATAACCGCGCTGAACCAAATCCTAATGTCATCTGCGGTGGCCTCGTGGGTGGTCCAGATAAAAATGATGACTTCTCTGATGACAGATCCAATTATGAGCAAACTGAGCCTACAATTTCAGGTTCTGCTCCTCTTGTAGGCATCTTCGCTAAACTGCAGAGTTTATATGGTAATATAGGTGAAGGTTACAACCATAATGAATCACCAGTGCCCCAGCAAAAAACACAAAGTATAAATCCAGTGAAAACAACAGTGTCTAAAACATCAGAAGGTGCCCCAGTTGAATTCCTTCACTCAATTAGTAGCTCATGGACTGTTGGAGGTGCAACTTATTACCGTCACAGGGTGATAATCAAGAACACTGCTTCGAAGCCAATCTCAGACCTTAAGTTGGTGATTAAGGATCTCTCAGGCTCTTTGTGGGGTCTCTCTCCAACAGAAGAAAAGAACACCTATGAACTTCCCCAGTGGCACAAGGTCTTGGATCCTGGCTCCGAGtgtatatttgtatatgttCAAGGCGGACCCCAGGCTAAAGTCTCGATTAAAAGCTTCCATTGA 1875 0.4555 MKNLNITLCLLLIALVRLGGSAPSGFNYGDAIDKSLMFFEAQRSGKLPLQQRVKWRGDSGLQDGFQQGVDLVGGYYDAGDHVKFGLPMAYSVAMLAWGAIEFSKEITDLNQMGHSLGAIKWGTDYFIKAHTQPNVLWGQVGDGVSDHYCWERAEDMTTSRGAYKIDEQHPGSDLAGETAAALAAAAIAFRPYNSSYSNLLLVHAKQLFTFADRFRGLYDDSISSAQQFYTSSGYSDELLWAATWMHLATGDEYYLKYVVDNAVYMGGTGWAVKEFSWDNKYAGVQILLSKVLLEGKAGPYAATLKQYQAKADYFACACLQKNDGYNVQKTRGGLLYVREWNNMQYVSSATFLLAVYSNYLSATKAQLSCPDGQIQPQELLNFVKSQADYILGENPADMSYLVGYGQKYPVHVHHRGASIASIFALHYEVGCTQGFEMWYNRAEPNPNVICGGLVGGPDKNDDFSDDRSNYEQTEPTISGSAPLVGIFAKLQSLYGNIGEGYNHNESPVPQQKTQSINPVKTTVSKTSEGAPVEFLHSISSSWTVGGATYYRHRVIIKNTASKPISDLKLVIKDLSGSLWGLSPTEEKNTYELPQWHKVLDPGSECIFVYVQGGPQAKVSIKSFH 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3019 624 Pfam Carbohydrate binding domain CBM49 533 611 IPR019028 GO:0030246
Ssu3g3019 624 PANTHER ENDO-1,4-BETA-GLUCANASE 9 579 - -
Ssu3g3019 624 PANTHER ENDOGLUCANASE 5 9 579 - -
Ssu3g3019 624 SUPERFAMILY Six-hairpin glycosidases 25 496 IPR008928 GO:0005975
Ssu3g3019 624 Gene3D - 25 494 IPR012341 GO:0005975
Ssu3g3019 624 Pfam Glycosyl hydrolase family 9 28 486 IPR001701 GO:0004553|GO:0005975
Ssu3g3019 624 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 389 415 IPR018221 -
Ssu3g3019 624 SMART CBM49_2 532 612 IPR019028 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3019 Ssu-Chr3 85393115 85397074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3019 26 624 Glycoside Hydrolase AT1G48930 67.780 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3019 K01179 - gmx:100812170 1182.93